Sphingomonas changnyeongensis: GVO57_05120
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Entry
GVO57_05120 CDS
T07798
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
schy
Sphingomonas changnyeongensis
Pathway
schy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
schy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GVO57_05120 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schy03021
]
GVO57_05120 (rpoB)
03400 DNA repair and recombination proteins [BR:
schy03400
]
GVO57_05120 (rpoB)
Enzymes [BR:
schy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GVO57_05120 (rpoB)
Transcription machinery [BR:
schy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GVO57_05120 (rpoB)
DNA repair and recombination proteins [BR:
schy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GVO57_05120 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QHL90329
UniProt:
A0A7Z2S925
LinkDB
All DBs
Position
1007327..1011487
Genome browser
AA seq
1386 aa
AA seq
DB search
MASKAVPASAGGATKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSDPATGYVSGLEKT
LRSVFPIRDFAGTAELDFVHYELEPPKYDTDECRQRGITYAAPMRVTLRLIVFEVDPDTE
SRSVLDIKEQDVYMGDMPLMTENGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHASGKY
LFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGLNGEQILNHFYSTVTW
VRGEGGWKVPFVAEAWRGQKPAFDVVNAETGEIVFAAGQKITPRAANKAAKDGLAMLLIP
TEEIFGRYSALDLINETTGEIYIEAGDEVSPENLDKLDRAGLDRVELLDIDHVNTGPWIR
NTLKADKAEERDQALSDIYRVMRPGEPPTRETAEALFAGLFFDPERYDLSAVGRVKLNMR
LELDCPDTVTTLRTEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGL
LRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKR
RVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGFIE
TPYRRVLDGKVTNEVVYLSAMEEAKHTIAQANAELDGEGRFVEELISARQAGEFLMATPD
IITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEETV
ARDSGAAIAAKRSGIVDQVDATRIVVRATGEVEAGKSGVDIYTLMKFQRSNQNTCINQRP
LVKVGDVVSAGDIIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISERIVKDDVFT
SIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITP
KGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAIE
REEIERLKKDADDERGILNRATWSRLRDMLIGQTATAAPKGVKKGVEIDAELLEQVERHE
WWKFAVADDRVQADLEAVKAQYDEAAKLIQDKFEDRREKLERGDELPPGVLKMVKVFVAV
KRKLQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTHVDIVLNPLGVPSRMNVGQIFETH
LGWAARGLGKQIAEALETWREANPKGQVVAPPDAVRERMKLVYGENYVAEIGARSDEEIV
EMAQLLKGGVPMATPVFDGAREADVSDMLALAGYDTSGQSTLYDGRTGEAFDRKVTVGYI
YMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEM
LTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELASMSDSDQDED
FAKAAE
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcaaggcagttccggcttcggctggcggcgcgaccaagcgcatccgcaaggtt
ttcggcaacatccacgaagtggtgcagatgccgaacctgatcgaggtgcagcgcgaaagc
tatgaacagttcctgcgctccgatccggcgaccggctatgtgtcggggctggaaaagacg
ctgcgcagcgtgttcccgatccgcgactttgccggcaccgccgagctggactttgtccat
tacgagcttgagccgccgaaatacgacactgacgaatgccgccagcgcggcatcacctat
gccgcgccgatgcgcgtgacgctgcgcctgatcgtgttcgaggtcgatcccgataccgaa
tcgcgctccgtgctcgatatcaaggagcaggacgtctatatgggcgacatgccgctgatg
acggagaacggcacgttcatcgtcaacggcaccgagcgcgtgatcgtcagccagatgcac
cgttcgccgggcgtgctgttcgatcatgaccgcggcaagacccatgcgtcgggcaagtat
ctgttcgccgcgcgcgtcatcccgtatcgcggctcgtggctcgatttcgagttcgatgcc
aaggacatcgtcaacgtccgcatcgaccgcaagcgcaagctgccggtcaccagcctgctc
tatgcgctgggcctgaacggcgagcagatcctcaaccatttctactcgaccgtcacctgg
gtgcgcggcgagggcggctggaaggtgcccttcgtcgccgaggcgtggcgcgggcagaag
ccggcgttcgacgtcgtcaacgccgagaccggcgagatcgtgttcgccgccggccagaag
atcacgccgcgcgccgccaacaaggcggccaaggacgggctggcgatgctgctgatcccg
accgaggagattttcggccgctattcggcgctcgacctgatcaatgagacgaccggcgag
atctatatcgaggcgggcgacgaggtgtcgcccgagaatctcgacaagctcgaccgtgcc
ggcctcgaccgggtcgaactgctcgacatcgatcatgtcaacaccggtccctggatccgc
aacacgctcaaggccgacaaggccgaggagcgcgaccaggcgctgtccgacatctaccgc
gtcatgcgccccggcgagccgccgacgcgcgagacggccgaggcgctgttcgccggcctg
ttcttcgatcccgagcgctatgacctgtcggccgtcggccgcgtgaagctcaacatgcgc
cttgagctcgactgcccggatacggtgacgacgctgcgcaccgaggacatcctggccgtc
gtcaagacgcttgtcgacctgaaggacggcaagggcgagatcgacgacatcgacaatctc
ggcaaccgccgcgtgcgttcggtcggcgagctgctggaaaaccagtaccgggtcgggctg
ctgcgcatggagcgtgcggtcaaggaacgcatgtcgtcggtcgatgtgtcgacggtgatg
ccgaacgacctgatcaacgccaagcccgcggtcgccgcggtgcgcgagttcttcggctcg
tcgcagctgtcgcagttcatggaccagaccaacccgctgtcggaagtgacgcacaagcgc
cgcgtgtccgccctcgggccgggcggtctcacccgcgagcgcgcgggcttcgaggtccgc
gacgtccatccgacccattatggccgtatctgcccgatcgaaacgccggaagggccgaac
atcggcctgatcaactcgctggcgagcttcagccgggtcaacaaatacggcttcatcgaa
acgccgtatcgccgggttctggacggcaaggtgaccaacgaggtcgtctatctgtcggcg
atggaagaggccaagcacaccatcgcccaggccaatgccgagctggatggcgaaggccgc
tttgtcgaggagctgatctccgcgcgtcaggcgggcgagttcctgatggcgacgcccgac
atcatcacgctgatggacgtcagccccaagcagctggtgtcggtcgccgcgtcgctgatc
ccgttcctggaaaatgacgacgccaaccgcgcgctgatggggtcgaacatgcagcgccag
gcggtgccgctggtccgcgccgaagcgccgttcgtcggcaccgggatggaagaaaccgtc
gcgcgcgattcgggcgcggcgatcgctgccaagcggtcgggcatcgtcgaccaggtcgac
gccacccgcatcgtcgtccgcgcaaccggtgaggtcgaggccggcaagtcgggcgtcgac
atctacacgctgatgaagttccagcgttcgaaccagaacacctgcatcaaccagcgtccg
ctggtgaaggtgggcgatgtggtgagcgccggcgacatcatcgccgacggcccgtcgacc
gagttcggcgagctggcgctcggccgcaacgcgctcgtcgcgttcatgccgtggaacggc
tacaattatgaagactcgatcctgatctccgaacggatcgtgaaggacgacgtcttcacc
tcgatccatatcgaggagttcgaggtgatggcccgcgacaccaagctcgggccggaagac
atcacccgcgacatcccgaacgtcggcgaggaagcgctccgcaacctcgacgaggcgggc
atcgtctatatcggtgccgaggtcgagccgggcgacatcctggtcggcaagatcacgccc
aagggcgaaagcccgatgacgccggaagaaaagctgctccgcgccattttcggcgaaaag
gcgtcggacgtgcgcgacacgtcgctgcgcctgccgccgggcgttgccggcaccgtcgtc
gaggtgcgggtgttcaaccgccacggcatcgacaaggacgagcgcgcgatggcgatcgag
cgcgaggagatcgagcggctgaagaaggacgccgatgacgagcgcggcatcctcaaccgc
gcgacctggtcgcgcctgcgcgacatgctgatcggccagaccgcgaccgccgcgcccaag
ggcgtgaagaagggggtcgagatcgacgccgaactgctcgagcaggtcgagcgccatgaa
tggtggaagttcgcggtcgccgacgaccgggtccaggccgatctggaagcggtcaaggcc
cagtatgacgaggccgccaagctgatccaggacaaattcgaggatcggcgcgagaagctg
gagcggggcgacgaactgccgccgggcgtgctcaagatggtcaaggtgttcgtcgcggtg
aagcgcaagctgcagccgggcgacaagatggccggccgtcacggcaacaagggcgtcatc
tcgcgcatcctgccgatcgaggacatgccgttcctcgaagacggcacgcatgtcgacatc
gtgctcaacccgctgggcgtgcccagccgcatgaacgtcggccagatcttcgagacgcat
ctgggctgggccgcgcgcggccttggcaagcagatcgccgaggcgctggaaacatggcgt
gaggccaatcccaagggccaggtcgtggcgccgcccgatgcggtgcgcgagcggatgaag
ctggtttatggcgagaattatgtcgccgaaatcggtgcccggtcggacgaggaaatcgtc
gaaatggcgcagctgctgaagggcggcgtgccgatggcgaccccggtgttcgacggtgcg
cgcgaagccgatgtgtcggacatgctggcgctggccggctatgacacctcgggccagtcg
acgctttatgacggccgcaccggcgaggcgttcgaccgcaaggtgaccgtgggctatatc
tatatgctcaagctccaccacctggtcgacgacaagatccatgcgcgctcgatcgggcct
tactcgctcgtcacccagcagccgctgggcggcaaggcgcagttcggcggtcagcgcttc
ggggaaatggaggtctgggcgctccaggcctatggcgccgcctacacgctgcaggaaatg
ctgacggtgaagtccgacgacgtggtcggccgcaccaaggtctatgaggcgatcgtcaag
ggtgacgacaccttcgaggccggcatccccgagagcttcaacgtgctcgtcaaggaaatg
cgctcgctcggcctcaatgtcgaactcgcgtccatgtcggactccgaccaggacgaggat
ttcgccaaggccgccgaataa
DBGET
integrated database retrieval system
