Sphingomonas changnyeongensis: GVO57_07100
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Entry
GVO57_07100 CDS
T07798
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
schy
Sphingomonas changnyeongensis
Pathway
schy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GVO57_07100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schy03019
]
GVO57_07100
Messenger RNA biogenesis [BR:
schy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GVO57_07100
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QHL90640
UniProt:
A0A7Z2NWH9
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All DBs
Position
1436438..1438078
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AA seq
546 aa
AA seq
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MTPGNELLFLALGGSGEIGMNVNLYGTQGKWVMVDCGITFADPGYPGIDVILPDLAFIEE
RLGDLLGIVLTHGHEDHIGALPYLAADLGVPLYATPFTAGLIRGKLEEEGVADQVRLHVI
DREHGRFELGPFSFDYVPLAHSIPEGNALVIGTPYGRIFHTGDWKLDDAPMLGTPSTAEE
LRAIGDAGVLALVCDSTNVFNEEASGSEGAVRAGLDQAIRGAEGRVLVTTFASNAARLAT
LADVARDTGRRICVAGRSLDRILKVARSVGYLRDFPETVDFDAAMKLPPREVMIIATGGQ
GEARAALGRIAFDQHPIKLDAGDLVVFSSKQIPGNEIAIGRIQNALAARGIRMITDRQAH
VHVSGHPGRPELEAMYEWIRPEIILPVHGERRHMAEQARFALEQGVPRAIVQENGQMVRL
APDGPAIIGHERAGRLMLDGDVILPADGATMQERRRIASYGQISVALALNASGRLVGEPQ
VRVQGVPVEEDKDDFLIEAADAAGEAARAAPRELEKLREAVRLAVRRKAVEWTGKKPIVD
VLVITL
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgacccccggcaacgaacttcttttcctcgcgcttggcggctcgggcgaaatcggcatg
aacgtcaatctctacggcacccagggcaaatgggtgatggtggattgcggcatcaccttc
gccgatcccggctatcccggcatcgatgtgatcctgcccgatctggcgttcatcgaggaa
cggctgggcgatctgctcggcatcgtgctcacccatggccatgaggatcatatcggcgcg
ctgccctatctggccgccgatctgggcgtcccgctctatgcgacgccgttcaccgccggg
ctgatccggggcaagctcgaggaagagggggtggccgatcaggtgcggctgcacgtcatc
gatcgtgagcatggccggttcgaactggggccgttctcgttcgactatgtgccgctcgcc
cattcgatccccgagggcaatgcgctggtgatcggcacgccctatgggcgcatcttccat
accggcgactggaagctcgatgatgcgccgatgctcggcacgccgtcgaccgcggaggaa
ctgcgcgccatcggcgatgcgggtgtgctcgcgctcgtctgcgattcgaccaatgtgttc
aacgaggaggcgtccggctccgaaggcgcggtgcgcgccgggctggatcaggcgatccgc
ggtgccgaggggcgggtgctggtcaccacctttgcatcgaacgccgcgcggctggcgacg
ctcgccgatgtcgcgcgcgacaccgggcggcgcatctgcgtggccgggcggtcgctcgac
cgcatcctgaaggtcgctcgctcggtcggctatctgcgcgattttcccgaaacggtcgat
ttcgacgccgcgatgaagctgcccccgcgcgaggtgatgatcatcgcgaccggcgggcag
ggcgaggcgcgggcggcgcttggccgcatcgccttcgaccagcacccgatcaagctcgat
gccggcgatctggtggtgttttcatcgaagcagatcccgggcaatgaaatcgcgatcggc
cgcatccagaatgcgctcgccgcgcgcgggatccggatgatcaccgaccgtcaggcgcat
gtccatgtctccggccatccgggccggcccgagctcgaggcgatgtatgaatggatccgg
ccggagatcatcctgcccgtccatggcgagcgccgccacatggccgaacaggcgcgtttt
gcgctcgaacagggcgtgccgcgcgcgatcgtgcaggaaaatggccagatggtgcgtctg
gccccggacgggccggcgatcatcggccatgagcgcgcgggccggctgatgcttgacggc
gatgtgatcctgcccgccgatggcgcgacgatgcaggagcggcggcggatcgcctcttac
ggccagatttcggtcgcgcttgcgctcaatgccagcgggcgtcttgtcggtgagccgcag
gtgcgcgtgcagggcgtgccggtcgaggaagacaaggatgatttcctgatcgaggccgcc
gatgcggcgggcgaggccgcgcgcgccgcgccccgcgagctggagaagctgcgcgaggcg
gtgcggctcgcggtgcggcgcaaggcggtcgaatggaccggcaagaagccgatcgtcgat
gtgctggtgatcacgctctga
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