Sphingomonas changnyeongensis: GVO57_08880
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Entry
GVO57_08880 CDS
T07798
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
schy
Sphingomonas changnyeongensis
Brite
KEGG Orthology (KO) [BR:
schy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schy03032
]
GVO57_08880 (topA)
03400 DNA repair and recombination proteins [BR:
schy03400
]
GVO57_08880 (topA)
Enzymes [BR:
schy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GVO57_08880 (topA)
DNA replication proteins [BR:
schy03032
]
Prokaryotic type
DNA Topoisomerases
GVO57_08880 (topA)
DNA repair and recombination proteins [BR:
schy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GVO57_08880 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
DUF7343
Motif
Other DBs
NCBI-ProteinID:
QHL90912
UniProt:
A0A7Z2S8R3
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All DBs
Position
1796390..1798993
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AA seq
867 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGRDFRVLASYGHIRDLPPKDGSVDPDDGFAMEWEVYGDKAR
QLKAIADEARGADRLILATDPDREGEAISWHVQEVLRQKKALPAQVERVTFNAITKAAVT
EAMARPRALDEDLIDAYRARRALDYLVGFTLSPILWRKLPGAKSAGRVQSVALRLVVDRE
REIEAFRAQDYWSVTAEMEHDGTAFLARLVRLKGEKVERLSIATEAAAEEARRAVEAGHF
TVASVETRPLMRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQALYEDGSITYMRTDGVQ
MDASAISAARAAIASRYDGAFVPDKPRQYQTKAKNAQEAHEAIRPTDFSRDRAGSGDHAR
LYELIFKRALASQMASARLERTTVELEDGTGRTALRATGQVVLFPGYLALYEEGRDDQSG
PDAGQADGDDDDARRLPRMAEGDAPARKAVHAECHSTQPPPRFSEASLVKRLEELGIGRP
STYASILQVLKDRAYVRVEKNRFMPEESGRLLTAFLERFFDRYVSYDFTAGLEEELDDIS
GGRAQWQAVLEAFWRDFKPKTAQVMEQKPSDITAALDAFLGDYLFPPRDDGQDARLCPQC
HQGRLSLRGGRFGAFIACSNYPDCKYTRRFGQGEGEGGEAGGDAVLGQDPATGLDVARKT
GRFGPYIQLGDGKEAKRASIPKDIGTLDLDWALKLLSLPREIGPHPETGQPITASIGRYG
PYLAHDGKYARLASTAEVFETGMNAAVVKLAEAASGGGRPARGAPRAPLRVLGAHPDSGA
DVRVMEGRYGPYVTDGETNATLPKASAPDAITLDEAVALLKARAEAAPARKGGAKKPAAK
KPAAKKAPAKTVAAKKAPAKKAAKKAD
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgtcatcgtcgaatcgcccgccaaggcgaagaccatcgagaaatatctgggc
cgcgacttccgggtgctcgcctcctacggccatatccgcgacctgccgcccaaggacggt
tcggtcgatccggatgacggctttgcgatggaatgggaggtttacggcgacaaggcgcgc
cagctgaaggcgattgccgatgaagcgcgcggggccgaccgcctgatcctggcgaccgac
cctgatcgcgagggggaggcgatcagctggcatgtgcaggaagtgctgcgccagaaaaag
gctctgcccgcccaggtcgagcgcgtgaccttcaacgcgatcaccaaggcggcggtgacc
gaggcgatggcgcggccgcgcgcgctcgacgaggatctgatcgacgcctatcgggcgcgc
cgcgcgctcgattatctggtcggcttcaccctgtcgccgatcctgtggcgcaagctgccc
ggtgccaagtcggcggggcgggtgcagtcggtcgcgctccggctggtcgtcgaccgcgaa
cgcgagatcgaggcgttccgcgcccaggactattggtcggtcaccgccgagatggagcat
gacggcaccgcttttctcgcccggctggtccggctgaagggcgaaaaggtcgagcggctg
tcgatcgccactgaggcggcagccgaagaggcgcgccgcgcggtcgaagctgggcatttc
acggtcgcgagcgtcgagacccggccgctgatgcgcaatccgccgccgcccttcaccacc
tcgaccctgcagcaggaagcggcgcgcaagctcggcttttcggccagccacacgatgcgc
atcgcccaggcgctctatgaggacgggtcgatcacctatatgcgcaccgacggcgtgcag
atggatgccagcgccatctccgccgcccgcgccgccatcgccagccgctatgacggtgcc
ttcgtgcccgacaagccgcgccagtatcagaccaaggccaagaatgcgcaggaagcgcat
gaggcgatccggccgaccgatttttcgcgcgaccgcgccggatcgggcgatcatgcgcgg
ctttacgagctgatcttcaagcgcgcgctcgccagccagatggcttcggcacggctggag
cgcacgaccgtcgagctggaggacggcaccggccgcaccgcgctgcgcgcgaccgggcag
gtggtgctgttccccggctatctcgcgctttacgaggaagggcgcgacgaccagagcggc
cccgatgccgggcaggccgacggcgatgacgacgatgcccgcaggctgccgcgcatggct
gagggcgatgccccggcgcgcaaggccgtgcatgccgaatgccattcgacccagccgccg
ccgcgcttttccgaagcgagcctcgtcaagcggctggaggaactgggcattggccggccg
tccacctatgcctcgatcctgcaggtgctgaaggaccgcgcctatgtgcgggtggaaaag
aaccgcttcatgcctgaggaaagcgggcggctgctgaccgcgttcctcgaacgctttttc
gaccgctatgtcagctatgacttcaccgccgggctggaggaggagctggacgacatttcg
ggcggccgcgcgcagtggcaggcggtgctcgaggcgttctggcgcgatttcaagcccaag
accgcgcaggtgatggagcagaagccctccgacatcaccgccgcgctcgatgcgtttctg
ggcgattatctgttcccgccgcgcgacgacggccaggatgcgcggctgtgcccgcaatgc
catcagggccggctgagcctgaggggtgggcggttcggggcgttcatcgcctgctccaat
tatccggactgcaaatatacccgccgtttcggccagggtgagggcgagggcggcgaggcc
ggtggcgacgccgtgctgggccaggatccggccaccgggctggatgtcgcgcgcaagacc
ggccggttcgggccgtacatccagctgggcgacggcaaggaggccaagcgcgcgtcgatc
cccaaggatatcggcacgcttgaccttgactgggcgctcaagctgctgagcctgccgcgc
gagattggcccgcatcccgaaaccggccagccgatcaccgcctcgatcggccgctatggc
ccctatctggcgcatgacggcaaatatgcgcggctggcctcgaccgccgaggtgttcgag
accggcatgaacgccgccgtcgtcaagctggccgaagcggcaagcggcggcgggcggccg
gcgcggggcgcgccgcgcgcgccgctgcgcgtgctgggcgcgcatcccgacagcggtgcc
gacgtgcgggtgatggaggggcgctacggcccctatgtcaccgatggcgaaaccaatgcg
acgctgcccaaggccagcgcgcccgatgcgatcacgctcgatgaggcggtcgcgctgttg
aaggcgcgggccgaagcggccccggcgcgcaagggcggggcgaaaaagccggcggccaag
aaaccggctgccaaaaaggctccggccaagactgttgccgccaaaaaggccccggccaaa
aaggcggcaaagaaagcggactga
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