Sphingomonas changnyeongensis: GVO57_09555
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Entry
GVO57_09555 CDS
T07798
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
schy
Sphingomonas changnyeongensis
Pathway
schy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
schy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GVO57_09555 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schy03021
]
GVO57_09555 (rpoD)
Transcription machinery [BR:
schy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GVO57_09555 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Disulph_isomer
COR
Exonuc_VII_L
DUF4168
Motif
Other DBs
NCBI-ProteinID:
QHL91020
UniProt:
A0A7Z2S5E2
LinkDB
All DBs
Position
complement(1930417..1932438)
Genome browser
AA seq
673 aa
AA seq
DB search
MAKTMDEPVDKAEGGDAPLIDLNEASVKKLITRAKKRGYITYDELNEALPQDQMSSEQIE
DIMSALNDMGVNIVENEDAGEDAEEQSDDDELDTAADSEAGFAPLPEKKKETVDRTDDPV
RMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIGWSNALNEGTMQL
REILDLDAMLNKDPTPDNLEDEEGGDGEISEKTAGPSFKDEDEVEEEPAGEDDDEMTERR
AQRPMEEDDEDNTLSLAAMEELLKPGALEKFARIAEIYQKFAKLQGQRLGAMGGGAAFAP
AKERDYQKLREELTAEVESVQFHNQKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVPRK
DFLDRYVNHELDESWLDSVRGVDKKWTAFANAEADAVERIRAEIAEIAQATGMALPEFRR
IVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTP
EEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANL
KETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKH
PSRSRKMRSFLDQ
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaacgatggatgaaccggtcgacaaagcggagggcggcgacgcgcccctgatc
gatctcaacgaagcgtcggtcaagaagctgatcacccgcgccaagaagcgcggctacatc
acctatgacgagctcaatgaggcgctgccccaggaccagatgtcgtccgagcagatcgag
gatatcatgtccgcgctcaacgacatgggtgtgaacatcgtcgagaatgaggacgccggc
gaagacgccgaggaacagtccgacgacgacgagctcgataccgccgccgattcggaagcc
ggcttcgccccgctgcccgaaaagaagaaggaaaccgtcgaccgcaccgacgatccggtg
cgcatgtatctgcgcgagatgggcgcggtcgagctgctcagccgcgagggcgaaatcgcc
atcgccaagcggatcgaggccgggcgcgacacgatgatcctcgggctgtgcgaaagcccg
atcaccttcaacgccatcatcggctggtcgaacgcgctcaacgaaggcacgatgcagctg
cgcgagatcctcgatcttgacgcgatgctcaacaaggatccgacgcccgacaatctcgaa
gacgaggaaggcggcgacggcgagatttccgaaaagaccgccggcccgtcgttcaaggac
gaggacgaggtcgaggaagagccggccggcgaagacgatgacgagatgaccgagcggcgc
gcccagcgcccgatggaagaggatgacgaggacaacaccctgtcgctcgccgcgatggag
gagctgctcaagcccggcgcgctcgaaaaattcgcccgcatcgccgaaatctaccagaaa
ttcgccaagctgcagggccagcgcctcggcgcgatgggcggcggtgccgcctttgcgccg
gccaaggagcgcgactatcagaagctgcgcgaggagctgaccgccgaggtcgaaagcgtc
cagttccacaaccagaagatcgaatatctggtcgatcagctctacagctataaccgccgg
ctgaccgcgctgggcgggcagatgctgcgcctggccgagcgccacaaggtgccgcgcaag
gatttcctcgaccgctatgtgaaccatgagctcgatgagagctggctcgacagcgtgcgc
ggcgtcgacaagaagtggacggcctttgccaatgccgaggccgatgcggtcgaacgcatc
cgcgccgaaatcgccgaaatcgcgcaggcgaccggcatggcgctgcccgagttccgccgg
atcgtgaacatggtccagaagggcgagcgtgaggcacggatcgcgaagaaggaaatggtc
gaggccaatctgcgcctcgtcatctccatcgccaagaaatacaccaatcgcgggctgcag
ttcctggacctgatccaggaaggcaatatcggcctgatgaaggcggtcgataagttcgaa
tatcgccgcggctataaattctcgacctacgccacctggtggatccggcaggcgatcacc
cgctcgatcgccgatcaggcgcgcacgatccgcatcccggtgcacatgatcgagacgatc
aacaagctggtgcgcaccagccgccagttcctgcacgaacagggccgcgagccgacgccc
gaggaaatggccgagcggctgtcgatgccgctcgaaaaggtccgcaaggtgatgaagatc
gccaaggaaccgatcagccttgaaacgccgatcggcgatgaggaggattcgcacctgggc
gatttcatcgaggacaagaacgccgtcatcccggtcgatgccgcgatccaggcgaacctg
aaggaaacggtgacacgcgtgcttgccagcctcaccccgcgtgaagaacgcgtgctgcgc
atgcgcttcggcatcggcatgaacaccgaccacacgctcgaggaagtcggccagcagttc
agcgtgacgcgcgagcgcatccgccagatcgaggccaaggcgctccggaagctcaagcat
ccgtcgcgcagccgcaagatgcgcagcttcctcgaccagtga
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