Streptomyces collinus: B446_13660
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Entry
B446_13660 CDS
T02787
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sci
Streptomyces collinus
Pathway
sci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B446_13660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sci03019
]
B446_13660
03009 Ribosome biogenesis [BR:
sci03009
]
B446_13660
Enzymes [BR:
sci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B446_13660
Messenger RNA biogenesis [BR:
sci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B446_13660
Ribosome biogenesis [BR:
sci03009
]
Prokaryotic type
rRNA processing factors
B446_13660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AGS69550
UniProt:
S5VME4
LinkDB
All DBs
Position
complement(3152053..3156447)
Genome browser
AA seq
1464 aa
AA seq
DB search
MLEPTEPTEGSELNTPSDTLPPRRRRRAASRPAGPPSGAEAPAEVTAPAIPAAEADEITE
AEEKARAEEKAKAESGAVEEPAPPTRTRRRATRRVSAPAGTSASAEAAETVVPAAAGAGE
SEAAVASAGADGTAEVAEEVAPRPTRRRATRRASAPAGTSASAEAAETVVPAAAGAGESE
AAVASAGADGTAEVAEEVAPRPTRRRATRRASAPAGTASASAEAVVPAADSGAAAEQPAE
QPEAAQAEPAAAPRRRASRRASAPAGTPKATETTEATGQTVTAAATAPAAEAPAAAEAVP
AAEAEAAPAGRTRRRAVRRAAAPAGAPEAAETAVPAETTVSADAEPAAEAAPQEPAPAEA
AEDAAPRRTRRRATRRVTAPAEAAEAPAAAAEETEIAEPVTAAAQPAAAEAPAEEAAPRR
RRRVVRQAATGFSAPAHTEAETESDSPRRPSRPAVAVFQAPVFTEPRFQTPERAAAQAAA
EAAGTEESEELEEAVTEDHAEERAEAGSRRRRRRRGAADEPQAVAPAAEDEEPEEAEEAE
DLADEDGDEAEGAEESGSRRRRRRGGRRRRRGDAAEGEAGEGADADSDDLAAEQAEQDAE
DTAEQEEEDAEDAHGEAGGSASSRRRRRRRRRAGDTSGDAEPGEGDPERTVVKVREPRKA
SEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQHGE
RTQIGVLEDGVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGE
VNFEALGMANGPRRIESALKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSM
TGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEEELRRDVERLQGQWEDIKKK
AKNGGSSAPSLLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWSTIHGYVSHVAPDLAERL
SRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNL
EETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQ
VAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTAVGGGGGGGGKRKKR
GRGGDGQEHVHETAAVAVETGEAVEPEVETAVEVAAELAEPVALPGPDFAPDEELYSSVA
EAEAAAGRGRGRRRASRRASAPAGAPKAEGRASRRAAEPAEAPTAQAVTAAEEAVRPVLP
EPAAEALAEPAAVEDAVVEAPEAAEDAAPKGRTRRRATRKVSAPAGSPEGAAPAVVTVAE
TAPAAEAPAEPAEPAAPAAEAAAESAAPARPRRRAVRKATAPTASEETAVVVVPSAAPEE
AAVETAEPVEQAEQAEEAVPAKKAARKTAAKKATAKKAAAKKTAAKKTAAKKTTAKKAAK
TAKTAAAKSTAKKTTTVPAAADEG
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaacccaccgagggttccgaactgaacacgccgagcgacaccctg
cccccgcgcaggcgtcgccgtgccgcctcccgcccggcgggtccgccctccggggccgag
gcgcccgccgaggtgaccgcgccggccataccggcagcggaggccgacgagatcaccgag
gccgaggagaaggcccgggccgaggagaaggccaaggccgagagcggggccgtcgaggag
cccgctccccccacccgtacgcgccgccgggccacccgtcgcgtgtccgcgccggccggt
acctccgcttccgccgaggccgccgagaccgtggtgcccgccgccgcgggcgccggtgag
tccgaggcggccgtggcgagtgccggtgccgacgggaccgccgaggtcgccgaagaggtc
gcgcctcgtcccacccgccgccgggccacgcgtcgcgcctccgcgccggccggtacctcc
gcttccgccgaggccgccgagaccgtggtgcccgccgccgcgggcgccggtgagtccgag
gcggccgtggcgagtgccggtgccgacgggaccgccgaggtcgccgaagaggtcgcgcct
cgtcccacccgccgccgggccacccgtcgcgcctccgcgcccgctggtaccgcgtccgct
tccgccgaggccgtggtgcccgccgccgactccggtgccgccgccgagcagccggcggag
cagccggaggccgcccaggccgagcccgccgcagcgccgcgccgccgcgcctcccggcgc
gcctccgcgcccgccggtacgccgaaggccaccgagaccaccgaggccaccgggcagacg
gtgaccgccgccgcgacggcacccgccgccgaggccccggccgccgccgaagccgtgccc
gccgccgaggccgaggccgcacccgccggccgcacgcgccgccgcgccgtccgccgggcc
gccgcgcccgccggcgccccggaagccgccgagaccgccgtgccggccgagaccaccgtc
tccgccgacgcggagcccgccgccgaggccgcgccgcaggagcccgcgcccgccgaggcc
gcggaggacgcggccccgcgccgcacccgccgccgcgccacccgccgggtgaccgcgccc
gccgaggccgccgaggcgcccgcggccgccgccgaggagaccgagatcgccgagcccgtc
accgccgccgcccagcccgcggccgccgaggcccccgccgaggaggcggcgccgcgccgt
cgccgccgggtggtgcgccaggccgcgaccgggttctccgcgcccgcgcacaccgaggcc
gagaccgagtccgactccccgcgccgcccgtcccggcccgccgtggccgtgttccaggcg
ccggtgttcaccgagccgaggttccagacccccgagcgtgccgccgcccaggccgccgcc
gaggccgccgggacggaggagtccgaggagctggaggaggccgtcaccgaggaccacgcc
gaggagcgcgccgaggccggctcgcgccgccgccgtcgccgccgtggtgccgcggacgag
ccgcaggccgtcgcgcccgccgccgaggacgaggagccggaggaggccgaggaggccgag
gacctcgccgacgaggacggcgacgaggccgagggtgccgaggagtccggctcccgccgc
cgtcgccgccggggcggtcgccgccgtcgtcgtggcgacgccgccgagggcgaggccggc
gagggcgccgacgccgacagcgacgacctggccgccgagcaggccgagcaggacgccgag
gacaccgccgagcaggaggaagaggacgccgaggacgcgcacggcgaggcgggcggttcc
gcctccagccgtcgccgtcgccgtcgccgccgtcgtgccggggacacctccggtgacgcc
gagccgggcgagggcgaccccgagcgcacggtcgtcaaggtccgcgagccccgcaaggcc
agcgagccctccgacgaggtgcagtccatcaagggctcgacccgtctggaggccaagaag
cagcgccgccgggaaggccgtgagcagggccgccgccgcgtcccgatcatcaccgaggcc
gagttcctggcccgccgcgaggccgtcgagcgcgtgatggtcgtccgccagcacggcgag
cgcacccagatcggcgtcctcgaggacggcgtgctcgtcgagcactacgtcaacaaggag
cagtcgacctcgtacgtcggcaacgtctacctgggcaaggtccagaacgtgctgccgtcg
atggaggccgccttcatcgacatcggcaagggccgcaacgcggtcctgtacgccggtgag
gtcaacttcgaggcgctcggcatggccaacgggccgcgccgcatcgagtccgccctgaag
tccggccagcccgtcctcgtccaggtgacgaaggaccccatcgggcacaagggcgcccgt
ctgaccagccaggtctccctcccgggccgctacctcgtgtacgtccccgagggctccatg
accggcatcagccgcaagctgcccgacaccgagcgggcccggctgaagaccatcctcaag
aagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggcgcgagcgag
gaggagctgcgccgggacgtcgagcggctccaggggcagtgggaggacatcaagaagaag
gcgaagaacggcggctccagcgcgccctcgctgctctacggcgagccggacatgaccgtc
cgggtcgtccgcgacatcttcaacgaggacttctccaaggtcgtcgtgagcggtgacgac
gcctggtcgaccatccacggctacgtctcgcacgtcgcgcccgacctcgccgagcggctg
tcgaggtggacctccgaggtcgacgtcttcgccacctaccggatcgacgagcagctcgcc
aaggccctggaccgcaaggtctggctgcccagcggcggttcgctggtcatcgaccggacc
gaggcgatggtcgtcgtcgacgtcaacaccggcaagttcaccggccagggcggcaacctc
gaggagaccgtcaccaggaacaacctggaggcggccgaggagatcgtgcgccagctgcgg
ctgcgcgacctcggcggcatcatcgtcatcgacttcatcgacatggtgctggagtccaac
cgggacctcgtgctgcggcgcctgctggaatgcctgggccgcgaccgcacgaagcaccag
gtcgccgaggtgacctcgctgggtctggtccagatgacccgcaagcgcgtcggccagggc
ctgctggagtccttctccgagacctgcgtccactgcaacggccgcggcgtcatcgtgcac
atggagcagccgaccgctgtcggcggcggcggtggcggtggcggcaagcgcaagaagcgc
ggccgcggcggcgacggccaggagcacgtgcacgagaccgccgccgtggcggtggagacc
ggcgaggccgtcgagcccgaggtggagaccgccgtcgaggtggccgccgagctggccgag
cccgtcgccctgcccggcccggacttcgcgccggacgaggagctgtacagcagcgtcgcc
gaggcggaggcggcggccggccgtggccgcggccgccgccgtgcgagccgccgtgcctcg
gcaccggccggtgcgccgaaggccgagggccgcgcgtcccgccgggccgccgagcccgcc
gaggcgcccacggcccaggccgtgacggccgccgaggaggccgtccggcccgtgctgccg
gagccggccgccgaggcgctggccgagcccgccgccgtcgaggacgcggtcgtcgaggcg
cccgaggccgccgaggacgcggcgcccaagggccgtacgcgtcgccgtgcgacccgcaag
gtgtcggcgcccgccggttcccccgagggggccgcgccggccgtggtgaccgtggccgag
accgcgcccgcggccgaggccccggcggagccggccgagccggcggcaccggccgccgag
gccgccgccgagagcgccgcccccgcccgcccgcgccgccgcgccgtgcgcaaggccacc
gcgccgaccgcgtccgaggagacggccgtcgtggtcgtcccgtcggccgcgccggaggag
gccgccgtggagacggccgagccggtggagcaggcggagcaggcggaggaggcggttccg
gccaagaaggcggcccgcaagaccgctgccaagaaggccaccgcgaagaaggcggccgcc
aagaagaccgcggccaagaagacggccgccaagaagacgacggccaagaaggcggcgaag
accgccaagacggccgccgccaagtcgacggcgaagaagaccaccacggtcccggccgcc
gccgacgagggctga
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