Streptomyces collinus: B446_16135
Help
Entry
B446_16135 CDS
T02787
Name
(GenBank) transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sci
Streptomyces collinus
Pathway
sci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B446_16135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sci03400
]
B446_16135
Enzymes [BR:
sci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B446_16135
DNA repair and recombination proteins [BR:
sci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B446_16135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGS70045
UniProt:
S5VNX2
LinkDB
All DBs
Position
complement(3735725..3739258)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAIEAAADGNRMHVDLVGPPAARPFAVAALAREAARPVLAVTA
TGREAEDLAAALRSLLPEEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQTADLNEIVQALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARALAEEHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGDAPIDVGAASLWSIADVRDRARELDMM
WWSISPFAADEELDAGTLKLGMHATETYRGDTARALADTKGWLADGWRTVYVTEGHGPAA
RTVEVLGGEGIAARLDVDLGEISPSVVHVACGCIDYGFVDPALKIAVLTETDLTGQKAAG
RDGARMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGPDSPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFSERYGQFPVNVRALSRFQTDTEAKA
VLEGLKDGAVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREVVPEARIATAHGQMSEGALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDVKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEVVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPSV
HQVLVPRPKTAKVGGKPLVGRELLGWVGEFLASILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggaccccgccctcgcggaagcgatc
gaggcggcggcggacggcaaccgcatgcacgtcgacctcgtcggtcccccggccgcccgc
cccttcgcggtcgccgccctcgcccgcgaggccgcccgcccggtgctcgccgtgaccgcg
acgggccgcgaggccgaggacctcgcggcggccctgcgctcgctgctgcccgaggagggc
gtcgtcgagtacccctcctgggagaccctcccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgcctcgccgtcctgcgccgcctcgcccacccccgccccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcgcccgtgcgctccgtgctccagccgcaggtc
aagggcctcggcgacctggagcccgtggcgctgaggaccggccagaccgccgacctgaac
gagatcgtgcaggccctcgcggccgccgcctacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtgttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctcgaagtcgccgagcacggcctgtgggccccgccctgccgcgagctgctg
ctcaccgacgacgtgcgcgcccgcgcgcgcgccctcgccgaggagcacccggagctgggc
gaactgctcaacaagatcgccgagggcatcgcggtcgagggcatggagtccctcgccccc
gtcctcgtcgacgacatggaactgctcctcgacgtcctgcccaagggcgccatggccgtg
gtctgcgacccggagcgggtccgcacccgcgccgccgacctcgtcgccaccagccaggag
ttcctccaggcgtcctgggcggccaccgcgggcggcggcgacgccccgatcgacgtgggc
gccgcctccctgtggtccatcgccgacgtccgcgaccgcgcgcgcgaactggacatgatg
tggtggtccatctcgccgttcgccgccgacgaggagctggacgcgggcaccctcaagctg
ggcatgcacgccaccgagacctaccgcggcgacaccgcgcgggcgctcgccgacaccaag
ggctggctcgccgacggctggcgcacggtctacgtcaccgagggccacggcccggccgcc
cgcaccgtcgaggtgctcggcggcgagggcatcgccgcccgcctggacgtcgacctcggc
gagatcagcccctccgtcgtccacgtggcctgcggctgcatcgactacggcttcgtcgac
ccggcgctgaagatcgccgtcctcaccgagaccgacctcaccggccagaaggccgccggc
cgcgacggcgcccgcatgccggcccgccgccgcaagacgatcgacccgctcaccctggag
ccgggcgactacatcgtgcacgagcagcacggagtcggccgctacatcgagatggtgcag
cgcaccgtgcagggcgccacccgcgagtacctggtcgtggagtacgcccccgccaagcgc
ggccagcccggcgaccgcctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcacccaccctgcaccgcctcggcggcgccgactggaccaagaccaag
gcgcgcgccaagaaggcggtcaaggagatcgccgccgacctgatcaagctctacagcgcc
cgcatggccgcccccggccacgccttcggccccgactccccctggcagcgcgagctggag
gacgcgttcccgtacgcggagacccccgaccagctcaccaccatcgccgaggtcaaggag
gatatggagaagtcggtcccgatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtccgcgccgccttcaaggccgtgcaggacggcaagcaggtcgccgtg
ctcgtccccaccaccctgctggtgcagcagcactacggcaccttctccgagcggtacgga
cagttcccggtgaacgtgcgggccctgtcccggttccagaccgacaccgaggccaaggcc
gttctggagggcctgaaggacggcgcggtggacgtcgtcatcggcacccaccgcctgttc
tcctcggagacgaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctgaccatg
tcggccaccccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccaccccgcccgaggaacggcacccggtgctcaccttcgtcgggccgtacgag
gagcggcagatcggcgcggccatccggcgcgaactgctgcgcgagggacaggtcttctac
atccacaaccgggtcgagtccatcgaccgggcggccgcgcggctgcgcgaggtcgtcccc
gaggcacgcatcgccaccgcccacggccagatgtccgagggcgcgctggagcaggtcgtc
gtggacttctgggagaagaagttcgacgtgctggtgtcgaccacgatcgtcgagtccggc
atcgacatctccaacgccaacacgctgatcgtggagcgcggcgacaccttcggcctctcc
cagctgcaccagctgcgcggccgcgtcggccgcggcagggagcgcggttacgcgtacttc
ctctacccgccggagaagccgctgacggagaccgcgcacgagcggctcgccaccatcgcc
cagcacaccgagatgggtgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gccggaaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctc
tacgtccgcatggtcggcgaggccgtcgcggactaccggcggcagctggagaccggcgag
atcgaggaggagccgccgctcgaggtcaagatcgaactgcccgtcgacgcgcacgtcccg
cacgactacgcgcccggcgagcggctgcgcctgcaggcctaccgcgccatcgcctccgcc
aactccgaggaggacgtcaaggccgtccgcgaggagctcaccgaccgctacggcaagctg
cccgagccggtggagaacctgctgctggtggccgggctgcggatgctggcgcgcgcgtgc
ggcgtcggcgaggtcgtgctccagggcaccaacatccggttcgccccggtcgagctgcgc
gagtctcaggagctgcgcctcaagcggctgtacccgggcacggtcatcaagccgtccgtg
caccaggtgctggttccgcgcccgaagaccgccaaggtcggcggcaagccgctcgtcggc
cgtgaactgctcggctgggtgggcgagttcctcgcctcgatcctcggctcgtga
DBGET
integrated database retrieval system
