Streptomyces collinus: B446_21115
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Entry
B446_21115 CDS
T02787
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sci
Streptomyces collinus
Brite
KEGG Orthology (KO) [BR:
sci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sci03016
]
B446_21115
Enzymes [BR:
sci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
B446_21115
Transfer RNA biogenesis [BR:
sci03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
B446_21115
Prokaryotic type
tRNA splicing ligases
B446_21115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AGS71035
UniProt:
S5VSU2
LinkDB
All DBs
Position
4879893..4881086
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AA seq
397 aa
AA seq
DB search
MSYVEMPGAKVPIRMWTDPATVEDVALRQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTANDLPGELSRLRSKIEQAIPVGRGMHEDPVEPG
AFHGLATAGWDDFWGRFDGVAEAVRFRQERATKQMGTLGGGNHFIEVCTDTDGTVWLMLH
SGSRNIGKELAEHHIGVAQKLPHNQDLVDRDLAVFVSDTPQMAAYRNDLFWAQEYAKHNR
ALMMALLKDVVRKEFKKARPTFEPEISCHHNYVAEERYEGMDLLVTRKGAIRAGSGEFGI
IPGSMGTGSYIVKGLGNDASFNSASHGAGRRMSRNAAKRRFSTKDLEDQTRGVECRKDSG
VVDEIPGAYKSIDQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagatgcccggcgcgaaggtcccgatccggatgtggaccgatcccgcg
acggtggaggacgtggccctgcgccagctccagaacgtggccaccctgccctggatcaag
ggcctggccgtgatgccggacgtgcactacgggaagggcgcgaccgtcggctcggtcatc
gcgatgcgcggagcggtgtgcccggccgcggtgggcgtggacatcgggtgcggcatgtcc
gcggtgcggacgtcgctgacggcgaacgacctgcccggtgagctgtcccggctgcgctcg
aagatcgagcaggcgatcccggtgggccgggggatgcacgaggacccggtcgagccgggc
gcgttccacggcctggcgaccgccgggtgggacgacttctgggggcggttcgacggcgtc
gcggaagcggtcaggttccgtcaggagcgcgccacgaagcagatgggaacgctcggaggc
ggtaaccacttcatcgaggtgtgcaccgacacggacggtacggtctggctgatgctgcac
tccgggtcccgcaacatcggcaaggaactcgccgagcaccacatcggcgtggcccagaag
ctcccgcacaaccaggacctggtcgaccgcgacctcgccgtcttcgtctcggacaccccg
cagatggcggcctaccgcaacgacctgttctgggcgcaggagtacgccaagcacaaccgg
gcgctcatgatggcgctcctgaaggacgtcgtccgcaaggagttcaagaaggcccggccg
accttcgagccggagatctcctgccaccacaactacgtggccgaggagcgctacgagggc
atggacctgctcgtcacccgcaagggcgcgatccgggccggctccggcgagttcgggatc
atcccgggctcgatgggcaccggctcgtacatcgtgaagggccttggcaacgacgcgtcc
ttcaactccgcctcgcacggcgcgggccggcgcatgagccggaacgcggccaagcggcgc
ttctccacgaaggacctggaggaccagacgcggggcgtggagtgccgcaaggactccggc
gtcgtggacgagatcccgggcgcgtacaagtccatcgaccaggtcatcgaccagcagcgg
gacctggtggaggtcgtggccaagctgaagcaggtcgtctgcgtgaagggctga
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