Streptomyces collinus: B446_21990
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Entry
B446_21990 CDS
T02787
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sci
Streptomyces collinus
Pathway
sci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B446_21990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sci03021
]
B446_21990
03400 DNA repair and recombination proteins [BR:
sci03400
]
B446_21990
Enzymes [BR:
sci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B446_21990
Transcription machinery [BR:
sci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B446_21990
DNA repair and recombination proteins [BR:
sci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B446_21990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
AGS71210
UniProt:
S5VTC5
LinkDB
All DBs
Position
5065206..5069105
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHVSVERQQIENRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWTRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAEKLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDTKGE
GRAFGSTAEAIMAFDAGELALQSQIDIRFPVGTIPPRGWTPPAREEGEPEWQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFFWAT
RSGVTVAISDVVVPEAKKEIVRGYEAQDEKVQKQYERGLITKEERTQELIAIWTKATNEV
AEAMNENFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLRIADRG
ADGVLRKTDDVETSVYARCLAEDIVVDGQVLAPAGTDLGDVLIEELVGRGVEEVKTRSVL
TCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEASGRVRIEETEKTKKLVVTPDDGSDETAFPISKRAKV
LVREGDHVEVGQQLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVQEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctccggatcggcctggccaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctgaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacgcgcgccaaggtgcgccgtgagcggatgggccacatcgagctggcggctccc
gtcacgcacatctggtacttcaagggtgtcccctcgcgcctcggctacctgctggacctg
gcgccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gaggagcgccggacccgcgacctgccctccctggaggcgcacgtctccgtggagcgccag
cagatcgagaaccgccgcgacgccgacctcgaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgagggc
gcggagcgcgagatgaagcagctgcgcgaccgcgcgcagcgcgagatcgaccgcctcgac
gaggtgtggacccggttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagaagctccgcgagatc
atccgcaccggcaagggccagaagaagacccgcgccctgaagcggctgaaggtcgtctcc
gcgttcctgcagacgtccaacagccccaagggcatggtcctggactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtcatcaaccgcaacaaccgcctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtggacgcc
ctcttcgacaacggtcgtcgcggccggccggtcaccggtcccggcaaccgcccgctgaag
tccctcagcgacatgctgaagggcaagcagggtcgattccgtcagaacctgctcggcaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgcccaaggcgatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcgcggccgc
acggtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gctcccaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgcccggtgacgatgccgacccaggac
atggtcctcggtctgttcttcctcaccaccgacggcgagctgcgtgacaccaagggcgag
ggccgcgcgttcggctccacggccgaggcgatcatggcgttcgacgccggcgagctggcg
ctgcagtcgcagatcgacatccgcttcccggtgggcaccatcccgccgcgcggctggacc
ccgccggcccgcgaggagggcgagcccgagtggcagcagggtgactcgttccgcctgcgc
accacgctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttcttctgggcgacc
cgttccggtgtcaccgtggccatctccgacgtcgtcgttcccgaggcgaagaaggagatc
gtccgcgggtacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggaagagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgagaacttccccaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcggcagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagaccatcccgcgtccgatcaaggcgtccttccgtgagggcctgtcc
gtgctggagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgccctg
cgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtcatc
atccgcgaggaggactgcggcaccgagcgcggtctgaagctgcggatcgccgaccgcggc
gcggacggcgtgctgcgcaagacggacgacgtcgagacgtccgtgtacgcgcgctgcctc
gccgaggacatcgtggtcgacggtcaggtcctggccccggccggcaccgacctgggcgac
gtcctcatcgaggagctcgtcggccgtggcgtcgaggaggtcaagacccgctcggtcctg
acctgcgagtccgccgtcggtacctgcgcgatgtgctacggccgttcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccccgtgtcgtcgagctcttcgaggcccgtaccccgaagggtgtcgccccg
atctccgaggcctccggccgcgtgcggatcgaggagaccgagaagaccaagaagctcgtc
gtcaccccggacgacggcagcgacgagacggcgttcccgatctcgaagcgtgccaaggtc
ctggtccgcgagggcgatcacgtcgaggtgggccagcagctcaccgtgggtgccaccaac
ccgcacgacgtgctgcgcatcctgggtcagcgtgccgtccaggtccacctggtcggcgag
gtccagaaggtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgtgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctggtcgagcgttcgaagttcgagaccgagaaccgtcgtgtggtccaggagggc
ggtcacccggcctccggtcgtccgcagctgatgggtatcaccaaggcctcgctggcgacg
gagtcctggctgtcggccgcctccttccaggagacgacccgagttctgacggacgcggcg
atcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctgtcccgctaccgcaacatccgggtcgagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
accggctccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtaa
DBGET
integrated database retrieval system
