Streptomyces collinus: B446_26190
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Entry
B446_26190 CDS
T02787
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sci
Streptomyces collinus
Pathway
sci03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B446_26190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sci03400
]
B446_26190
Enzymes [BR:
sci01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
B446_26190
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
B446_26190
DNA repair and recombination proteins [BR:
sci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
B446_26190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
DUF7573
zf-FPG_IleRS
Auto_anti-p27
DZR
Zn_ribbon_recom
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AGS72046
UniProt:
S5V2C6
LinkDB
All DBs
Position
6029769..6030629
Genome browser
AA seq
286 aa
AA seq
DB search
MPELPEVEVVRRGLERWVAHRTVADVEVLHPRAVRRHVAGADDFAHRLKGHHIGTPSRRG
KYLWLPLEETNQSVLAHLGMSGQLLVQQHQAPDEKHLRIRVRFADGLGTELRFVDQRTFG
GLSLHDNTPDGLPDVIAHIARDPLDPLFDDEAFAVALRRKRTTVKRALLDQSLISGVGNI
YADEALWRARIHYERPTANLTRPVTAELLGHVRDVMNAALAVGGTSFDSLYVNVNGESGY
FDRSLDAYGREGLPCRRCGTPMRRRPWMNRSSYFCPKCQRPPRVPS
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttgcccgaggtcgaggtcgtccggcgcggcctggagcggtgggtcgcccac
cgcacggtcgcggacgtcgaggtgctgcacccgcgcgcggtgcgccggcacgtcgccggc
gccgacgacttcgcgcaccgtctcaagggtcaccacatcggcacgcccagccggcgcggc
aagtacctgtggctgccgctggaggagaccaaccagtccgtcctggcccacctgggcatg
agcggccagctgctggtgcagcagcaccaggcgccggacgagaagcacctgcgcatccgg
gtccggttcgccgacggcctcggcaccgagctgcgcttcgtggaccagcgcaccttcggc
ggcctgtcgctgcacgacaacacccccgacggcctgcccgacgtcatcgcgcacatcgcc
cgcgaccccctggacccgctgttcgacgacgaggcgttcgccgtcgcgctgcgccgcaag
cggaccaccgtcaagcgggccctgctcgaccagtcgctgatcagcggggtcggcaacatc
tacgcggacgaggcgctgtggcgcgcgcgcatccactacgaacgcccgacggcgaacctc
acccgcccggtcacggccgaactgctcggacacgtccgggacgtgatgaacgcggcgctg
gccgtcggcggcaccagcttcgacagcctgtacgtcaacgtcaacggggagtcgggctac
ttcgaccggtccctggacgcgtacgggcgtgagggactgccgtgcaggcggtgcggtacg
ccgatgcggcgccggccgtggatgaaccggtccagctacttctgcccgaagtgtcagagg
ccgccgcgcgtcccgtcgtaa
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integrated database retrieval system
