Streptomyces collinus: B446_26870
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Entry
B446_26870 CDS
T02787
Name
(GenBank) hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sci
Streptomyces collinus
Pathway
sci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B446_26870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sci03019
]
B446_26870
Messenger RNA biogenesis [BR:
sci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B446_26870
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF1732
Motif
Other DBs
NCBI-ProteinID:
AGS72182
UniProt:
S5VNN0
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All DBs
Position
6195465..6197150
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AA seq
561 aa
AA seq
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MSHPHPELGSPPPLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGNRERVGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDHRLTDLHAFARLSEEGIDLLLADSTNAEVPGFVPPERDISNVLRQVFAGARKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVDGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVAVDLIEGKAKISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VVDSSTGKITGGPHVQARGSGIEDSAFAAVLPKIAEVLERSAQDGVVEPHQLQQLIRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcaccctgaactcggctcgcccccgccactcccggagggcggcctgcgg
gtcaccccgctcggcggtctcggcgagatcggccgcaacatgacggtcttcgaatacggc
ggccgcctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gacctgatcctgccggacttctcgtccatccgggaccgcctcgacgacatcgagggcatc
gtgctcacgcacggccacgaggaccacatcggcggcgtgccctacctgctccgcgagaag
ccggacatcccgctgatcggctccaagctgaccctggccctcatcgaggccaagctccag
gagcaccggatccggccgtacaccctggaggtggcggaggggaaccgcgagcgcgtcggc
cccttcgactgcgagttcgtcgcggtcaaccactccatcccggacgccctggcggtcgcc
atccgcacccccgccggcatggtggtgcacaccggcgacttcaagatggaccagcttccg
ctggaccaccgcctcaccgacctgcacgcgttcgcccggctgagcgaggagggcatcgac
ctcctgctcgccgactccacgaacgccgaggtgccgggcttcgtcccgcccgagcgggac
atctccaacgtcctgcgccaggtcttcgccggcgcccgcaagcggatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagatcctggacgcggcgcacgagtacggccgc
agggtcgccttcgtcggccgctccatggtccgcaacatgggcatcgcccgggacctcggc
tacctgaaggtgccgccgggtctggtggtggacgtcaagacgctggacgacctgcccgac
cacgaggtggtgctggtctgcacgggttcccagggcgagccgatggcggccctgtcccgc
atggccaaccgcgaccaccagatccgcatcgtcgacggcgacacggtcatcctggcctcg
tccctgatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccggtgg
ggcgccaacgtcgtccacaagggcaacgccaaggtgcacgtctccggccacgcctccgcg
ggcgagttgctgtacttctacaacatctgccgcccgaagaacctgatgccggtccacggc
gaatggcgtcacctgcgcgccaacgccgagctgggtgccctgacgggcgtcccgcacgac
cggatcgtcatcgccgaggacggcgtcgcggtcgacctgatcgagggcaaggccaagatc
tcgggcaaggtccaggcgggatacgtctacgtcgacggcctgtccgtcggtgacgtcggc
gagccggccctgaaggaccgcaagatcctcggcgacgagggcatcatctcggtcttcgtg
gtcgtggactcctccaccggcaagatcaccggtggcccgcacgtccaggcccgcggctcc
ggtatcgaggactcggccttcgcggccgtgctgccgaagatcgccgaggtcctggagcgg
tccgcgcaggacggcgtcgtggagccccaccagctccagcagctcatccgccgtaccctc
ggcaagtgggtctccgacacctatcgccgcaggccgatgatcctcccggtcgtcgtggag
gtctga
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