Spermophilus citellus (European ground squirrel): 308630997
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Entry
308630997 CDS
T11988
Symbol
WDR33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform 1
KO
K15542
polyadenylation factor subunit 2
Organism
scil Spermophilus citellus (European ground squirrel)
Pathway
scil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
308630997 (WDR33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scil03019
]
308630997 (WDR33)
Messenger RNA biogenesis [BR:
scil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
308630997 (WDR33)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WDR55
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_TEP1_2nd
ASA1
Beta-prop_WDR90_POC16_2nd
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
CFAP251_N
Beta-prop_EIPR1
Collagen
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_Vps41
eIF2A
WD40_RFWD3
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR11_2nd
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
308630997
NCBI-ProteinID:
XP_081117963
LinkDB
All DBs
Position
11:complement(38209212..38322251)
Genome browser
AA seq
1336 aa
AA seq
DB search
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEE
VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAE
IEQEMATLQYTNPQLLEQLKIERLAQKQAEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQG
FQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQG
PPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQ
GPPGPQGHLGPQGPPGTQGIQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLN
PRGMQGPPGPRENQGPAPQGMMMGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPP
PQGSMLGPPQELRGPPGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPI
PFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSR
GPPNHHLGPMSERRHEQSGGPEHGPERGPFRGGQDCRGPPDRRGPHPDFPDDFSRPDDFH
PDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGRGAARGPPGAWEGR
RPGEERFPREPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEENFDASD
EAARARDLRGRGRGAPRGGRKGLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDAPR
PDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAPGGPSEDRGGK
GRGGPGPSQRVPKSGRSSSLDGDHHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMN
SGPPRRGASRGGGRGR
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atggccacagaaattggttctcctcctcgttttttccacatgccacggttccaacaccag
gcacctcgacaactgttttataagcgacctgactttgcacagcagcaagcaatgcagcag
cttacctttgatggaaaacgaatgagaaaagctgtaaaccgaaaaaccatagactacaat
ccatccgtaattaagtatttggagaatagaatatggcaaagagaccagagagatatgagg
gcaattcagcctgacgcaggttattataatgatctggttccacctataggaatgttaaat
aatcctatgaatgcagtaacaacaaaatttgttcggacatcaacaaataaagtaaaatgc
ccagtatttgttgtcaggtggactccagaaggaagacggttggtcactggagcttctagt
ggagagttcacattgtggaatggactcactttcaattttgaaacaatattacaggctcat
gatagcccagtgagggccatgacttggtcacataatgacatgtggatgttgacagcagac
catggaggatatgtgaaatattggcagtcgaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgatgacggcactgttagaatctgggactttcttcgttgccatgaggaaagaattctc
cgagggcatggtgctgatgtgaaatgtgtagactggcatccaaccaaagggttagttgtg
tcaggaagtaaagatagtcaacagccaatcaagttctgggatcccaagactggacagagt
cttgcaacacttcatgcccataaaaacactgtaatggaagtgaaattaaacctcaatggc
aattggctactcacggcatcacgtgatcatctctgtaaactttttgacatccgaaacctg
aaagaagagcttcaagtcttccgtggtcataagaaagaagccacagctgtggcctggcat
cctgtgcacgaagggctttttgccagtggaggatcagatggttctttgttattctggcat
gttggagtagagaaggaagtgggtgggatggagatggcccatgaaggaatgatctggagt
ctggcttggcatcctcttggacatattctctgctcaggctcaaatgaccacactagcaaa
ttctggactcgaaaccgaccaggtgataaaatgcgagatcggtataatctaaacctatta
cctggaatgtctgaagatggagtagaatatgatgaccttgaacctaacagcctggcagtg
attccagggatgggaataccagaacaactaaaattagctatggagcaggagcagatgggg
aaggatgaatcgaacgaaattgaaatgacaattccaggtttagattggggaatggaggag
gtgatgcaaaaggatcagaaaaaagtacctcagaagaaagttccttatgcaaaacctatt
cctgctcagttccagcaggcctggatgcaaaataaagttccaatccctgctccaaatgag
gtgctgaatgacagaaaagaggacattaaattggaagagaagaaaaaaacacaagcggaa
attgagcaagaaatggccacgttacagtataccaatccacagcttttggagcaacttaaa
attgaaagacttgcgcagaaacaggctgagcaaattcagccccctccctcatctggcact
cctctccttggaccccagccctttccaggacaaggtccaatgtctcagattcctcaaggt
tttcagcagccccatccatctcagcagatgccaatgaacatggctcagatggggcctcca
ggtccacagggacagtttagaccccctggacctcagggacaaatgggaccacaaggtcct
ccactgcatcagggaggtggggggccacaaggattcatgggaccacaagggccccagggc
ccaccccaggggctaccaaggcctcaggacatgcatgggccccaaggaatgcagaggcac
cctggacctcatggccctttgggacctcaggggccacctggaccacagggtagttctggt
cctcaaggtcatatgggtcctcagggtccaccaggcccacagggtcacataggacctcaa
ggtccacctggtccccagggccacttaggcccacaggggcctcctggtactcaaggaata
cagggaccacctggtcccagaggaatgcaaggacctccgcatcctcatgggatacaaggt
gggccagggtctcaaggaatccaaggtcctgtttctcaggggcctctgatgggattgaat
ccaagaggaatgcaggggcctccaggtccccgagagaatcaaggtcctgctccccaaggg
atgatgatgggccatccacctcaagagatgagaggacctcaccctccaagtggactgctg
ggacacggtcctcaggaaatgagaggtcctcaggagatgagaggcatgcaggggcctcca
cctcaaggatcaatgctgggccctccccaggaacttcgaggtcctccaggctcacaaggt
cagcagggcccgccccagggctctttgggacctccaccccagggtggcatgcaagggccc
cctggacctcagggacagcagaacccggcaagagggccacatccatctcaagggccaata
ccattccagcagcagaaaacacctctgctaggtgatgggccccgcgcccccttcaatcag
gaaggacaaagtacaggccccccgcccctcataccaggcttaggacaacagggagcacaa
ggtcgcatcccccctctgaaccctggacaaggacctggccctaacaaaggtgactcccgt
ggccctccaaaccatcacctaggcccgatgtcagagaggcggcatgagcagagtggtggc
cctgagcatgggcctgagagagggccttttcggggtggccaggactgcaggggtccccct
gacaggcgtggccctcaccctgacttccccgatgacttcagcagacctgacgacttccac
cccgacaagcgctttggccaccgcttacgtgaatttgaggggcgaggaggacctttgcca
caggaagagaaatggaggcgagggggccctggacctccgtttcctcctgatcacagggaa
ttcagcgagggagatggccggggtgctgcccgaggccctccaggggcatgggaaggccgc
agacctggagaggagcgcttccctcgggagcccgaggacccacgttttcgagggcgcaga
gaagaaagcttcagaagaggagcacccccaagacatgagggtcgtgccccacccagagga
agggatggttttcctggtcctgaagactttggtccagaggagaattttgatgcttctgat
gaggcagccagagcacgagatctcagaggccgaggtcgaggtgccccacgaggaggaagg
aaaggtttacttcccacccctgacgagttccctcgctttgaaggaggacggaagccagac
tcctgggatggaaaccgagagccaggaccaggtcatgaacatttccgtgatgctccccgc
cctgatcatccccctcatgacggtcattccccagccagcagagagcgctcttcttctcta
caaggcatggacatggcatccctgccaccccgaaagcgcccctggcatgatgggccaggc
acttctgagcacagagagatggaggccccagggggcccttctgaggaccgaggaggcaaa
gggcgaggaggcccgggaccttctcagagagtgccaaaatctgggcgttccagctctttg
gatggagaccaccatgatggataccatagagacgaaccttttgggggtcctccaggcagt
ggcaccccttctcgagggggccggagtggcagtaactggggtagagggagcaacatgaac
tctggcccaccaaggcgaggtgcttcaaggggtggtggaaggggtcggtag
DBGET
integrated database retrieval system
