Spermophilus citellus (European ground squirrel): 308636525
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Entry
308636525 CDS
T11988
Symbol
NUP160
Name
(RefSeq) nuclear pore complex protein Nup160 isoform 1
KO
K14303
nuclear pore complex protein Nup160
Organism
scil Spermophilus citellus (European ground squirrel)
Pathway
scil03013
Nucleocytoplasmic transport
scil05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
308636525 (NUP160)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
308636525 (NUP160)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scil03019
]
308636525 (NUP160)
03036 Chromosome and associated proteins [BR:
scil03036
]
308636525 (NUP160)
Messenger RNA biogenesis [BR:
scil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
308636525 (NUP160)
Chromosome and associated proteins [BR:
scil03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
308636525 (NUP160)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Nup160_C
TPR_NUP160_120_M
Beta-prop_Nup120_160
NUP160_helical
HEAT_Nup120
DUF3942
TTC22_C
Motif
Other DBs
NCBI-GeneID:
308636525
NCBI-ProteinID:
XP_081128181
LinkDB
All DBs
Position
2:complement(238442861..238500144)
Genome browser
AA seq
1406 aa
AA seq
DB search
MAAAGSLERSFVELSGTERERPRRFREFTVCGVGTTNPVAGTVKYSESAGGFFYVESGKL
LSVTRNRFIHWKISADILELVEESLDLNLLNNAVRLKFQNCNILPGGVYVSETQNHVIIL
ILTNQTVHRLFLPHPSRMYRNELVIESQMQSIFTDIGKVDFRDPCNYQLIPTVPGLCPNS
TTSAAWLSSDGEALFALPSASGGIFVLKLPPHDISGIVSIVELKQSSVMQRLLTGWMPTA
IRGDQGPSDRALSLAVHCVEHDAFIFALCQDHKLRMWSYKDQMCLMIADMLEYVPVNKDL
RLTAGTGHKLRLAYSPSMGLYLGIYMHAPKRGQFCIFQLVSTENNRYSLDHISSLFTSQE
TLIDFALTSTDIWALWHDVENQTIVKYINFEHNIAGQWNPVFMQPLPEEEIVIRDDQDPR
EMYLRSLFTPGRFINAALCKALQIFCRGTERNLDLSWSELKKEVTLAVESEVRFPLQGSV
TEYEFSREAFRNLQQEFWCKFYACCLQYQEALSQPLALHLNPHTNMVCLLKKGYLSFLVP
SSLVDHLYLLSDENLVTEDETTISDDVDVARDVVCLIKCLRLIGESVTMDMSVMMEMSCY
NLQSPEKAAEQILEDLITNDVENVMEDICSKLQEIRNPVHAIGLLIREMDYETEVEMEKG
FNSAQPLNVRMNLSQLYGSSSAGCIVCRGVYRIASTRFLICRDLLILQQLLMRLGDAVIL
GAGQLFQAQQDLLHRTAPLLLSYYLIKWGSQCLATDVPVDTLESNLQHLSVLELTDSGTL
MTNRFVSSPQTIVELFFQEVARKQIISHLFSQPKAPLNQTGLNWPEIIIAVTNYLLQLLW
PSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNVGSCRFMLGRCYLVTGEGQKALECF
CQAASEVGKEEFLDRLIRSEDGDIVSSPRLQYYDKVLRLLDVVGLPELVIQLATSAITEA
GDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDL
VEFPYVNLHNEVVAIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGR
EVRTLRGLEKQGNCYLAAINCLRLIRPEYAWIVQPASGAVYDRPGASPKRNHDGECTAAP
TNRQIEILELEDLEKECSLARIRLTLAQHDPSAVAVAGSSSAEEMVALLVQAGLFDTAIS
LCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWAWLAANQLSSIITTKESSATDEAWR
LLSTYLDRYKVQNNLYHHCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYDLLEEA
VDLVSEYVDAVLGKGHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENSANSHNIALSQ
KILDKLEDYQQKVDKATRDLLYRRNL
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcgggatccctggaacggagcttcgtggagctaagcgggaccgagcgcgaa
aggccaaggcgctttcgagaattcacagtctgcggcgttgggactacaaatcccgtggct
ggaacggttaaatacagtgagagtgcagggggctttttctatgtggaaagcggcaagttg
ttgtccgtcaccagaaacagattcattcattggaagatctccgcagatatattggagctg
gtggaggagtcactggacctaaatctgttgaataatgcagttcgcctaaaattccagaat
tgtaacatcttacctggaggggtttatgtctcagagactcagaatcatgtgataatctta
atattaaccaatcaaacagtgcacagattatttttaccacacccttcccggatgtatagg
aatgagttggtaattgaaagtcaaatgcagtcaatattcactgacattggaaaagttgat
ttcagggatccttgcaactatcaattaattccaacagtacctggactatgccctaattct
accacctcagcagcctggcttagcagtgatggggaggcgctgtttgctctcccatctgct
tctggaggcatctttgttcttaaactacctcctcatgacatttctggtatagtgtctatt
gtggaactgaaacagagttcagtgatgcagcgattgctcacagggtggatgccaacagct
atcaggggtgatcaggggccttcagaccgtgcactcagtcttgctgttcattgtgtggag
cacgatgccttcatctttgccctgtgtcaggaccacaaactacgaatgtggtcttataag
gaccaaatgtgtctgatgatagctgacatgctggagtatgtccctgtgaacaaagacctt
cggctcactgctggaactgggcacaaattgcgacttgcttattccccttccatgggactc
tacctaggaatatacatgcatgctccaaaacgaggacagttctgcattttccagttggtg
agcactgagaataaccgctatagtctagatcacatttcctcattattcacttctcaggag
acactgattgactttgccttaacctccacggatatctgggccctgtggcatgatgtagag
aaccaaacaattgtgaaatacatcaactttgaacataatattgcaggtcagtggaatcca
gtttttatgcagcctttgccagaggaagaaattgtcatcagagatgatcaagaccccagg
gaaatgtatttgcggagtctgtttacaccaggacgattcataaatgcagctttatgtaaa
gctttacagattttctgcagaggaactgagaggaatttggatctttcgtggagtgaacta
aaaaaggaagttacattagctgtcgaaagtgaggtgagatttccgctccaaggaagtgta
acagagtatgaattctccagggaggcatttagaaatttacaacaggaattctggtgcaaa
ttctacgcctgctgtcttcagtaccaagaagctctctcccagcctcttgccctacacttg
aatcctcacacaaatatggtgtgcctactgaaaaaagggtacctgtcttttcttgtgccc
tcctccttagtggatcatctgtatctcctgtctgatgagaaccttgtgacagaggatgag
acaaccatttctgatgatgtggatgtcgctcgagatgtcgtatgtcttataaaatgcctc
cggttgatcggagagtctgtaactatggatatgtcagttatgatggaaatgagttgttac
aacctacagtctccagaaaaggctgcagaacagattttggaagatttgatcactaatgac
gtagaaaatgtgatggaagatatctgtagtaaactgcaagagattaggaaccctgtccat
gccattggacttcttatacgggaaatggattatgaaacagaagtggaaatggaaaaagga
ttcaattcagctcagcctttgaatgttcgaatgaacctttcccagctctatggtagtagc
tcagcggggtgtattgtgtgcagaggcgtgtatagaattgctagtactcgattcctgatc
tgccgagacctcttgatcttacagcaactactgatgaggctaggagatgcagtgattttg
ggagctggccagctctttcaagctcagcaagacctgcttcatcggacggctcccctgctc
ttatcctattacctcattaagtggggaagtcagtgcttggcaactgatgttccagtggac
acactggagtctaatctccaacacttgtcagtactggaactaactgactctggtacttta
atgacaaacaggtttgtatctagccctcagacaattgtggagttattcttccaagaagtt
gcaagaaaacagattatatctcatctcttctctcaaccaaaggcacctctgaaccaaacg
ggattgaattggcctgaaataattattgcagttaccaattatttattgcagcttttatgg
cctagcaatcctggttgtctctttctagaatgtttgatgggaaattgtcagtatgtacaa
ttgcaggattatattcaactgctacatccctggtgtcaagtcaatgttggttcctgtcga
tttatgctgggacgttgttacctagttacaggcgaaggacaaaaggctttggaatgtttc
tgtcaggcagcatcagaagtgggcaaagaagaattcttagatcgcttgatccgctcagag
gatggggacattgtatcctcccccaggctgcagtattatgataaggttttacgtcttcta
gatgttgttggattgcctgagctggttattcagttggctacatcagcaataactgaagca
ggtgatgactggaaaagtcaggctactttacggacatgcattttcaaacatcatttggat
ttgggtcacaacagccaagcatatgaggccttaacccaaattcctgactccagcaggcag
ttagattgtttacggcaactagtggtagttctctgtgaacgctcacagctacaggatctt
gtagagtttccttatgtgaatctgcataatgaggttgtggcaataattgaatctcgtgct
agagctgtggaccttatgactcacaattactatgaacttctctatgcctttcacatctat
cgccacaattaccgcaaagctggcacagtgatgtttgaatatggaatgcgtcttggcaga
gaggttcgaactctccggggacttgagaagcaaggcaactgttatctggctgctatcaat
tgtttacggctaattcgtccagaatatgcatggattgtgcagccagcatctggtgcagtg
tatgatcgccctggagcatcccctaaaagaaatcatgatggagagtgcacagctgcccca
accaatcggcaaattgaaatcttagaactggaagatctggagaaagagtgctccttggct
cgcattcgtctcactctggctcagcatgatccgtcagcagttgcagttgcaggaagttcc
tcagcagaggagatggttgctctcttggttcaggctggcctctttgacaccgccatatca
ctctgtcagacttttaagcttcccttaacaccagtctttgaggggcttgctttcaaatgc
atcaagttacagtttggaggagaggcagcacaagcagaagcctgggcctggctggcagcc
aatcagctgtcctccatcatcactactaaagaatcaagtgctacagatgaagcatggcga
ctattgtctacttatctagacaggtacaaagtgcagaataacttatatcaccactgtgta
atcaataagctcttgtcccacggagtgcctctgcccaattggcttataaacagttacaag
aaagttgatgctgctgagttgcttcgtctatacttgaactatgaccttttggaagaagct
gtggatttggtctctgagtatgtggatgctgtattgggaaaaggacatcagtactttgga
attgagtttccactgtctgcaacagccccaatggtgtggctcccatactcctctattgat
cagcttctccaggctctgggagagaacagtgccaacagtcacaacatcgcactatcccag
aaaatacttgacaaattagaggactaccagcaaaaagttgataaggcaacacgtgattta
ttataccgccggaacttgtga
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integrated database retrieval system
