Spermophilus citellus (European ground squirrel): 308636594
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Entry
308636594 CDS
T11988
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform 1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
scil
Spermophilus citellus (European ground squirrel)
Pathway
scil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308636594 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scil03041
]
308636594 (DDX42)
Enzymes [BR:
scil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
308636594 (DDX42)
Spliceosome [BR:
scil03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
308636594 (DDX42)
Complex B
308636594 (DDX42)
Complex C
U2 SnRNP specific factors
308636594 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
308636594
NCBI-ProteinID:
XP_081128296
LinkDB
All DBs
Position
17:63471247..63514569
Genome browser
AA seq
937 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDNPITSAATKSIPGFGNTGNITSAPVT
YPSVGAQGVNNTASGNNSREGIGGGNGKRERYTENRGGGRHSHGESGNRHGDSPRHGDSG
RHGDGYRYPESSSSRHTDSHRHGENRHGGSTGRHGESRGANDGRNGESRKEGCNRESKVD
PKVDSSKMDKMDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggcccgggcactaagcggggatttggtttcggaggttttgcc
atcagtgctgggaagaaggaggaacctaaactcccacaacagtcccatagtgcctttggg
gcaactagctcatcttctggatttgggaagtcagctccaccacagcttccttccttctac
aaaattggatctaagcgagccaactttgatgaagaaaatgcctattttgaagatgaggaa
gaagactctagcaatgttgacttaccttacattcctgctgaaaactcacctacccgccag
cagtttcattccaagccagcagattctgacagtgatgatgatcccttggaagcatttatg
gctgaagtggaggatcaggcagctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagaaaacccaactgccggtgtggttcaggaggaagaagaagacaat
ctggaatatgatagtgatgggaatccaatcgcaccttccaaaaaaataatcgatcctctt
ccgcccattgatcattcagagattgactacccaccatttgaaaaaaatttttacaatgag
catgaggagataaccaacctcactccacaacagttaatagatctccggcataagctcaat
cttcgggtttctggtgctgcacctcctagaccaggaagtagttttgctcattttggattt
gatgaacaacttatgcatcagattcggaaatctgagtacacacagcccactccaatacaa
tgtcagggtgtgcctgttgcattaagtggtagagacatgattggtattgccaaaacaggc
agtggaaaaactgcagcctttatctggcccatgttgattcatataatggaccagaaggaa
ttggaaccaggtgatggaccaattgcagtgattgtgtgtcctactagggagctttgtcag
cagatccatgcagaatgtaagcggtttgggaaagcatataatcttcgatcagtggctgtg
tatggaggagggagcatgtgggagcaagccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccaggtcgactgattgatcatgtgaagaagaaagctactaatcttcaaaga
gtctcttaccttgtatttgatgaagcagatcgaatgtttgatatgggatttgagtaccag
gttcgatccatagcaagtcatgttcgtcctgacagacagactctcttattcagtgcaact
tttcggaaaaagattgaaaaactggcgagagatatcctaattgaccctattcgagtggtg
cagggagatattggagaggcaaatgaagatgtgacacagattgtggagattctccattct
gggcctagtaaatggaactggcttacccggcgtctggtggaatttacttcttccgggagt
gtcctcctgtttgttactaaaaaagctaatgctgaagagctagccaataaccttaagcag
gagggtcataatcttgggttgcttcatggggacatggatcagagtgaaagaaacaaggtc
atttccgactttaagaaaaaggacatcccagtcctagtagccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgtcattaactatgatgtggcacgagacattgat
acccatactcataggattggccgcacaggaagagcgggtgagaaaggtgtagcctatacc
ctgttgacccctaaggacagcaattttgctggtgaccttgtccggaacttggaaggagcc
aatcagcatgtttccaaggaacttctggatctggcaatgcagaatgcgtggtttcggaaa
tcccgcttcaaaggaggaaaaggcaaaaagctgaacattggtggaggaggcctaggctat
agggagcgacctggcctaggctctgagaacacggaccgaggaaataacaacaatgtaatg
agcaattatgaggcttataagccttccacaggagccatgggagatcggctgacagcaatg
aaagcagcttttcagtcacagtacaagagtcactttgttgcagccagtttaagtaatcag
aaggctggaagctctgctgctggggcaagtggatggactagtgcagggagcttgaattct
gttccaactaattcagcacagcagggccataatagtcctgacaaccccatcaccagtgcc
gccaccaagagcatcccaggctttggcaatacagggaacatcaccagtgctccagtgacc
tacccttctgtcggagcccagggagtcaacaacacagcttcaggaaataacagcagagaa
ggaattgggggtggcaatgggaagcgagagagatatactgagaatcggggtggtggccgc
catagccatggagagagtggcaatcggcatggtgatagtccacggcatggagacagtggt
cgacatggagatggataccgctacccagaaagtagcagcagccgccatactgacagccac
aggcatggggagaacaggcatggaggaagtacaggccggcatggggaaagccggggtgca
aatgatggtcggaatggagaaagcaggaaagaaggttgtaatcgtgaaagcaaggtggac
cccaaggtggacagcagcaagatggacaagatggacagcaagacagataagacagcggat
ggttttgctgtccctgagccacccaaacgcaagaaaagtagatgggacagttag
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