Spermophilus citellus (European ground squirrel): 308638017
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Entry
308638017 CDS
T11988
Symbol
AMFR
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
scil Spermophilus citellus (European ground squirrel)
Pathway
scil04137
Mitophagy - animal
scil04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
308638017 (AMFR)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
308638017 (AMFR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
scil04121
]
308638017 (AMFR)
Enzymes [BR:
scil01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
308638017 (AMFR)
Ubiquitin system [BR:
scil04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
308638017 (AMFR)
Multi subunit type E3
ERAD complex
308638017 (AMFR)
LMBR1L-GP78-UBAC2 complex
308638017 (AMFR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
G2BR
zf-RING_2
zf-C3HC4_2
CUE
zf-C3HC4
zf-RING_11
zf-C3HC4_3
zf-RING_UBOX
zf-ANAPC11
zf-rbx1
zf-RING_5
zf-RING_16
Prok-RING_4
zf-C3HC4_4
SVIP
zf-RING_Vps41
zf_RING_Vps8
Form-deh_trans
RING_Ste5
Motif
Other DBs
NCBI-GeneID:
308638017
NCBI-ProteinID:
XP_081131087
LinkDB
All DBs
Position
18:complement(42607927..42648666)
Genome browser
AA seq
643 aa
AA seq
DB search
MPLLFLERFPWPSLRTYTGLSGLALLGTIISAYRALSQPEAGPGEPEPLTAPLQPEAPVP
ARPGAGGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQYIVFGPLRVSERQHLKD
KFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPM
SSHGRVLSLLIAMLLSCCGLAVVCCVTGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIH
LWDLNHEGTWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRY
LFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLF
HNSCLRSWLEQDTSCPTCRMSLNIADSNRAREDHQGENLDENLVPVAATEGRPRLNQHNH
FFHFDGSRIASWLPSFSVEVMHTTNILGITQASNSQLNAMAHQIQEMFPQVPYHLVLQDL
QLTRSVEITTDNILEGRIQVPFPTQRTEGIRPALNSPMERPSADQEEGEASPQTERVPLD
LSPRLEENLDFSEVDVESSEVEDFEARGSRFSKSADERQRMLVQRKDDLLQQARKRFLNK
SSEDVSASESFLPSEGTSSDPVTLRRRMLAAAAERRLQKQQTS
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgctcttcctcgagcgcttcccgtggcccagcctccgcacctacacgggcctc
agcggcctggccctgctcggcaccatcatcagcgcctaccgcgccctcagccagcccgag
gccgggcccggcgagccggagccgctaacggccccgctgcagcccgaggcgcccgtgccc
gcccggcccggcgcggggggaccccgggcccgcgacgtggcccagtacctgctctcggac
agcctcttcgtttgggttctggtaaacactgcttgctgtgttttgatgttggtggctaag
cttatccagtatattgtgtttggccctctgcgagtgagtgagagacagcacctcaaagac
aagttttggaattttattttctacaagttcattttcatttttggtgtgctgaatgtccag
acggtggaagaggtggtcatgtggtgcctgtggtttgctggacttgtttttctgcatctg
atggttcagctctgcaaggaccgatttgaatatctttccttttctcccactacaccgatg
agtagccatgggcgagtcctgtctctgttgattgctatgctgctttcctgctgtgggtta
gcagttgtctgctgtgtcacaggctacacccatggaatgcacaccttggctttcatggct
gcagagtctcttcttgtgacagtgaggacagcccatgtgattttacggtatgtaattcac
ctctgggacctcaaccatgaagggacctgggaaggcaagggaacctacgtctattatacc
gattttgtcatggagctcactcttctgtccctggacctcatgcaccacattcacatgttg
ttatttggcaacatctggttatctatggccagcctggtcatctttatgcagctgcgttac
ctgtttcatgaggtgcagcgtcgaatccgtcggcacaagaactatctgcgtgtggtcggg
aacatggaagccaggtttgcagttgcaactccagaggaactggctgtcaacaatgacgac
tgtgccatctgctgggactccatgcaggctgcaaggaaactgccttgcggacatcttttc
cacaactcctgtcttcgttcctggctagaacaagatacatcctgtccaacatgcagaatg
tctcttaatattgctgacagtaatcgtgccagagaagaccatcaaggagagaacttggat
gagaatttggttcccgtagcagccactgaaggcagacctcgcttaaaccaacacaatcac
ttcttccactttgatgggtcccggattgcaagttggctgccaagcttttcagtggaagta
atgcacaccaccaacattcttggcattacgcaggcgagcaactctcagctgaatgcaatg
gctcatcagattcaggagatgttcccccaggttccataccacctggtgctgcaggacctc
cagctgacgcgctcagtggaaattacaacagacaacatcttagagggacggattcaagta
ccttttcccacacagcggacagaaggcatcagacctgctttgaacagtcctatggaaagg
cccagcgctgaccaggaggagggagaagcttcccctcagactgagcgtgtgccattggac
ctcagtcctcgcctggaggagaacttggacttcagtgaagtggatgtggagtccagtgag
gtggaagactttgaggcccgggggagccgcttctccaagtctgctgacgagagacagcgc
atgttggtccagcgcaaggatgacctcctgcagcaggctcggaagcgattcttgaataaa
agttctgaagatgtctcagcctcagagagctttctcccctcagaaggcacgtcctctgac
cccgtgaccctgcgtcgaaggatgctggctgctgctgctgagcggaggcttcagaagcag
cagacctcctag
DBGET
integrated database retrieval system
