Spermophilus citellus (European ground squirrel): 308640698
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Entry
308640698 CDS
T11988
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3 isoform 1
KO
K12600
superkiller protein 3
Organism
scil Spermophilus citellus (European ground squirrel)
Pathway
scil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308640698 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scil03019
]
308640698 (SKIC3)
Messenger RNA biogenesis [BR:
scil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
308640698 (SKIC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_8
TPR_16
TPR_19
TPR_14
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_11
CFAP70_mid_TPR
CFAP70_TPR_C
ANAPC3
TPR_9
TTC22_N
CABIN1_N
Sel1
ARM_TT21_2nd
TPR_INTS8_3
ARM_TT21_C
ARM_TT21_5th
TPR_15
TPR_5
Retrotran_gag_2
DUF7017
Fis1_TPR_C
Sey1_3HB
TPR_30
SNAP
BTAD
TPR_20
Motif
Other DBs
NCBI-GeneID:
308640698
NCBI-ProteinID:
XP_081134642
LinkDB
All DBs
Position
1:208647388..208753430
Genome browser
AA seq
1564 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPNQLLAWQGLASLYEKCNHVNAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHLEVARTWHRLIKTRQEEGADNQELHQLWRKLTQLLAESMEDQNNETQQ
LLLTAFDNALGLSDKIPSEDHQVLYRHFIQCLLKFPHETARLKKACEGMINIYPTIQYPL
EVLCLHLIESGNLTDEGQQYCCKLVEMNSKSGPGLIGLGIRALQDKKYEDAVRNLTEGLK
ETPLCTAGWYHLSEVQIKMHRPKEAVLSCNQALKNIENHGVSGDSLYQKNLCLRLKAEAL
IKLSDYESSEEAICSLNQVSDANNIPGLLVLKSLAYLNKGLLDEATKIMEDLLSSYPDLA
EVHALEALIHFTKKDYLQAEKCFQRALERDAEVAEYHYQLGLTYWFIGEETRRDKTKALT
HFLKAARLDPYMGKVFCYLGHYYKDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEDMEAALAILTTVTQRASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASEINPESTYSVFKVAAIQQILGKYKEAIAQYQLIIK
KKEDYVPALKGLGECYLMMAKAALVDYLDGKAVDYIEKSLEYFTWALQHRADVSCLWKLV
GDACTSLCAVSSSKVNVNILGVLLGQKEGKQALKKTELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAEMGSSMNDLKELLEKSLHCLKKAVRLDSNNHLYWNALGVVACYRGV
GNYALAQHCFIKSIQSEQINAVAWTNLGVLYLANENIEQAHEAFKMAQSLDPSYLMCWIG
QALIAETVGSYDTMDLFRHTTELNMHTEGAIGYAYWVCTTLQDKSNRETELYQYNILQMN
AIPAAQVVLCKYVERIQNYAPAFTMLGYLNEHLQLKKEAADAYQRAMLLLQTEEDQDTYN
VTVRNYGRLLSSIGEYDKAIQAFKSIPLEELEDLIGFALALFKKGLYKESSKAYERALSV
AESEQDKAYILTALAITEYKQGKMDIAKSLLFKCSILKEPTIESLQTLCALGLVMQDATL
SKAALNELLKHIKHKDSDYHRCLLTSAIYALQGRSVAVQRQASKAVHSNPADPALWSLLS
RVVAQCAQRNAKGGAVAGNVAHILDSNHGKKALLYTAINQLAMGSSSAEDEKNIALKTIQ
KAALLSPGDPAVWAGLMAACHADDKLALVNNTQPKRMDLYLALLSAVSASIKGKEFLENY
NQSLERWSLSQAVTGLIDTGRVSEAEALCTKNLKNNPDQPAIILLLRQVQCKSLLESQKP
LPDAVLDELQKTVMSNSTSVPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQGSWSGKL
SSLLKLALLALEICMANVSSDHWPSLVQEATTEALKLCFCPLAVFLQALLQFNRKMGARE
TRRLLERVVYQPGYPKSIVSAARWYLLRHLYFKNDYELIDVLVKNAETHRDTRALELNQK
LSSQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagaagtgaagactgctctaaaaagtgcaagagatgcaattagaaacaaa
gaatataaagaagctttgaaacattgcaagacagtcttgaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagcagagctagaacaacctgatcaggcccaa
ggtgcctataagaaagctgctgaactagaaccaaatcaattactagcttggcaggggtta
gcaagcttgtatgagaagtgtaatcacgtaaatgctaaggatgacttaccgggtgtttac
caaaaactcctggatctttatgaaagtgttgacaaacagaagtggtgtgatgtctgtaag
aaacttgtggatctctattaccaagaaaagaaacacctagaggtggctcgaacatggcat
agattgataaagacacggcaagaagaaggtgcagacaaccaggagcttcatcagctgtgg
aggaaattgactcagttgctggctgagagtatggaagatcagaataatgaaacccagcaa
ttgcttttaactgcattcgacaatgccctgggcttatcagataagattcctagtgaagat
catcaagtactatataggcatttcattcagtgtttattgaaatttcctcatgagactgct
aggttgaagaaggcttgtgaaggaatgataaacatctatcccaccatacagtatccgtta
gaagtgctctgtttgcatttaattgaatcaggaaatcttactgatgagggacagcagtat
tgttgtaagctagtggaaatgaattcaaaaagtggtccaggcctcattggattaggcatt
agagcattacaagacaaaaaatatgaagatgctgttaggaatctaacagaagggctaaag
gaaacccctctctgtacagctggatggtatcatctctccgaagttcaaatcaaaatgcat
agacccaaggaagctgttctttcatgcaatcaagctctgaagaacatagaaaatcatggt
gtgtctggagacagtctttatcagaagaacctttgtcttcgtttgaaagcagaagctttg
attaaactctcagattacgaatcttcagaggaggcaatttgttctctcaatcaggtttct
gatgcaaataatatcccaggacttttggttctcaaaagcttggcttatctgaacaaaggc
ttattagatgaagctacaaagattatggaagaccttctctcttcttaccctgacctagct
gaagttcatgcccttgaggctttgattcattttaccaaaaaggactatctacaagcagaa
aaatgttttcagagagcacttgagagagatgctgaagttgctgaatatcattaccagctt
gggttaacatattggttcataggtgaagaaacaagaagagataaaacaaaggctcttacc
cactttctgaaggctgcaagactggatccatacatgggcaaagttttctgctatttaggt
cattattacaaagatgtagtgggagataaaaacagagcacgaggatgttacaggaaagct
tttgaattagatgacactgatgctgaatctggagctgcagcagttgacttaagtgtggag
cttgaagatatggaagctgccttagctatcctaacaacagtaactcagagggcaagtgct
ggaacggcaaaatgggcctggcttcggcgaggactatactatttgaaagctggtcaacat
tcacaagcagtggctgatttacaggcagcattaagggcagacccaaaggacttcaattgt
tgggagtcattaggagaggcatacttaagcagaggtggctatacaacagccttgaagtcc
ttcacaaaagccagtgagatcaacccagaatccacatacagtgtgtttaaggttgcagca
atacaacaaatcctaggcaagtacaaggaggccatagctcaataccagctgattattaaa
aagaaagaagattacgtacctgctttgaaaggtttgggcgaatgctatctcatgatggca
aaagctgctctagttgattatcttgatgggaaagccgtagactacatagaaaaatccctg
gaatattttacttgggccctgcagcatcgagctgatgtatcctgcctttggaagctggtt
ggggatgcttgtaccagtctgtgtgcggtttcatcatctaaagtgaatgttaatatttta
ggggtccttctaggccagaaagaaggaaagcaagcattaaagaaaactgagctcctccat
cttggaggaaggtgttacggtcgtgcattaaaactgatgtctacatctaatacatggtgt
gatcttggaattaattattatcgccaagcacaacatctagcagaaatgggcagcagcatg
aatgatcttaaagagttgctagagaaatctttacattgtctgaaaaaggcagtgagactc
gacagtaataatcacttatactggaatgctcttggtgtagttgcatgttatagaggtgtt
ggaaattatgcccttgctcagcactgtttcatcaaatcaatccagtcagaacaaattaat
gctgtcgcgtggaccaatttgggagtgttataccttgcaaatgaaaacattgagcaagct
catgaagctttcaaaatggctcagtctcttgatccatcttatttaatgtgctggattgga
caagctcttattgcagagacagttggaagttatgataccatggatctcttcaggcacact
acagaactcaatatgcatactgagggagcaataggttatgcatactgggtctgcacaaca
ttgcaagataaaagcaacagagaaacagagctataccaatacaacatcctccagatgaat
gctattccagcagcacaagttgttttgtgtaaatatgtggaaagaattcagaattatgct
ccagctttcacaatgttgggttacttaaatgaacatctacaactgaaaaaggaagcagca
gatgcgtaccaaagggcaatgttgttgctacaaactgaagaagatcaagatacttataat
gttacagtaagaaattatggcagattgttgagttccattggtgaatacgacaaagctatc
caggcttttaagtcaatacctctcgaggagttagaagacctcataggctttgcattggct
ttatttaagaaggggctatataaagagagcagcaaagcatatgaaagagccttgtctgtt
gctgaatcagagcaagacaaagcctatatcttgacagctctggcaataacagaatataaa
caaggaaaaatggatatagccaagtcactgctattcaaatgctctattttaaaggaacca
accatagaaagccttcaaaccctgtgtgctctaggattggtaatgcaggatgctacactg
tctaaagcagcacttaatgagttactgaagcatatcaaacacaaagacagtgattatcac
aggtgccttcttacttcagctatttatgcactccaaggccgcagtgtggcagtacaacgg
caagcgtctaaagctgttcacagtaacccagctgatcctgctctttggtctctattatcc
cgagttgttgctcagtgtgctcaacgaaatgcaaaggggggtgctgtagcaggaaatgtg
gctcatattctggactcaaatcatggaaagaaggcattactgtacactgcaataaatcag
ttggcaatgggaagcagttcagcagaagatgaaaaaaatatcgcactaaagactatacag
aaggcagctctcctttctccaggtgaccctgctgtctgggctggactgatggcagcctgt
catgctgatgataagctggctctagtgaacaacactcagccaaagaggatggatttatac
ttggcactgttatctgctgtttctgcttcaattaagggcaaggaatttcttgaaaattat
aaccaatctcttgaaaggtggtctctctcacaagctgtcactggtctgatagacacagga
agagtatctgaagctgaagctctctgcacaaagaatttaaaaaataacccggatcagcca
gctattatattacttttgagacaagttcagtgtaaatcactcctggagtcacaaaagcca
ctcccagatgcagtacttgacgaacttcaaaaaacagtgatgtccaactcaacttctgtt
ccagcttggcagtggttggcacaggtgtatcagtctcaaggaatgatgggtgctgcagaa
atgtgttacagaaagagtctacaagtagcatcccaacagggaagctggagtgggaaactc
tcaagtctattgaaactagcattgcttgccttagaaatctgtatggctaatgtttccagt
gatcactggccatccttggttcaagaggctacaactgaggccttgaaactttgtttctgc
ccactagctgtttttttacaagctttgttacaattcaaccgcaaaatgggggcacgagag
actcggcgacttttggagagagtggtatatcaacctggatatccgaaatctattgtatca
gctgcacgttggtacctgctaagacacctgtacttcaaaaatgactatgagctcattgat
gtgttggtaaaaaatgctgaaactcacagagatacaagagcattggaactgaatcagaaa
ttgtcctcacagtaa
DBGET
integrated database retrieval system
