Spermophilus citellus (European ground squirrel): 308641248
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Entry
308641248 CDS
T11988
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform 1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
scil
Spermophilus citellus (European ground squirrel)
Pathway
scil04137
Mitophagy - animal
scil04141
Protein processing in endoplasmic reticulum
scil05014
Amyotrophic lateral sclerosis
scil05022
Pathways of neurodegeneration - multiple diseases
scil05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
308641248 (VCP)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
308641248 (VCP)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
308641248 (VCP)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
308641248 (VCP)
05022 Pathways of neurodegeneration - multiple diseases
308641248 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scil03019
]
308641248 (VCP)
03009 Ribosome biogenesis [BR:
scil03009
]
308641248 (VCP)
04131 Membrane trafficking [BR:
scil04131
]
308641248 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scil04147
]
308641248 (VCP)
Messenger RNA biogenesis [BR:
scil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
308641248 (VCP)
Ribosome biogenesis [BR:
scil03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
308641248 (VCP)
Membrane trafficking [BR:
scil04131
]
SNARE
SNARE associated proteins
Others
308641248 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
308641248 (VCP)
Exosome [BR:
scil04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
308641248 (VCP)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
AAA_7
ATPase
AAA_18
DUF815
ABC_tran
IstB_IS21
nSTAND_NTPase5
NB-ARC
TsaE
AAA_24
ResIII
NACHT
Viral_helicase1
SLFN-g3_helicase
Zot
Motif
Other DBs
NCBI-GeneID:
308641248
NCBI-ProteinID:
XP_081135801
LinkDB
All DBs
Position
2:38138418..38154719
Genome browser
AA seq
806 aa
AA seq
DB search
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGSGGGTGGSVYTEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctctggagccgattcaaagggtgatgacttatcaacagccattctcaaacagaag
aaccgtcccaatcggttgattgttgatgaagccatcaatgaggacaacagtgtggtatcc
ttgtcccagcccaagatggatgaactgcagttgttccgaggtgacacagtgttgctgaaa
ggaaagaagaggcgggaagctgtgtgcattgtgctttctgatgacacatgttctgatgag
aagattcgaatgaatagagttgttcggaataaccttcgtgtacgcctaggggatgtcatc
agcatccagccatgccctgatgtgaagtacggcaaacgtatccatgtgctacccatcgat
gacacagtggaaggcatcactggcaatctctttgaggtataccttaagccgtacttcctg
gaagcttatcgacccatccggaaaggggacattttccttgtccgtggtgggatgcgtgct
gtggagttcaaagtagtggagacagatcccagcccttattgcattgttgctccagacaca
gtgatccactgtgaaggagagcctatcaaacgagaggatgaggaagagtccttgaatgaa
gtaggctatgatgacattggtggctgtaggaagcaactagctcagataaaggagatggtg
gagcttcctctgagacatcctgcactctttaaggcaattggcgtgaagcctcctcgggga
attctcctctatggacctcctgggactgggaagaccttgattgcccgagctgtggcaaat
gagactggagcttttttcttcctgatcaatggtcctgaaattatgagcaagttggctggt
gagtctgagagcaaccttcgtaaagcctttgaggaggctgaaaagaatgctcctgctatc
atattcatcgatgagctagatgccattgctcccaaacgagagaaaactcatggggaggtg
gagcggcgtatcgtatcacagttattgactcttatggatgggctaaagcagagagcacat
gtaatagttatggcagcaaccaacagacccaatagcattgatccagccctacggcgattt
ggtcgctttgacagggaagtagatattggaatccctgatgctacaggacgtttggaaatt
cttcagatccataccaagaacatgaagctggcagatgacgtggacctggaacaggtagcc
aatgagactcatggacatgtgggtgctgacttagcagctctgtgctcagaggctgccctg
caggccatccgcaagaagatggatctaattgacttagaggatgagaccattgatgctgaa
gtcatgaactccctggcagtgactatggatgatttccggtgggccttgagtcagagcaac
ccatcagcactgcgggaaactgtggtagaagtgccacaggtaacctgggaagacattggg
ggcctggaggatgtcaaacgtgagcttcaggagctagtccagtatcctgtagaacaccca
gacaaatttcttaagtttggtatgacaccatccaagggagttctattctatggacctcca
ggctgtgggaaaaccttgctggctaaagctattgctaatgaatgccaggccaacttcatc
tccatcaagggtcctgaactgctcaccatgtggtttggagaatctgaggccaatgtcagg
gaaatctttgacaaggcacgccaagctgctccttgtgtgctgttttttgatgagctggat
tcaattgccaaagctcgtggtggtaacattggagatggtggtggggctgctgaccgagta
attaaccagatcctgacagaaatggatggcatgtccacaaaaaagaatgttttcatcatt
ggcgctaccaatcggcctgacattattgatcctgccatcctaagacctggccgccttgat
cagcttatttacatcccactgcctgatgagaagtcccgtgttgccatcctcaaggccaat
ctgcgcaagtccccagttgccaaggatgtggatttggagttcctggcaaagatgactaat
ggcttctctggagcagacctgacagagatttgccaacgtgcttgtaagctggccattcgt
gaatccattgagagtgagattaggcgagaacgggagaggcagacaaacccatctgccatg
gaagtagaagaagatgatccagtgccagagatccgcagagatcactttgaggaagccatg
cgctttgcccgtcgttctgtcagtgataatgacattcggaagtatgaaatgtttgctcaa
acccttcagcagagtcgaggttttggcagtttcagattcccttcagggaaccagggtgga
gctggccctagtcagggcagtggaggtggcacaggtggcagtgtgtacacggaagataat
gatgatgacctgtacggctaa
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