Spermophilus citellus (European ground squirrel): 308646327
Help
Entry
308646327 CDS
T11988
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform 1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
scil Spermophilus citellus (European ground squirrel)
Pathway
scil04066
HIF-1 signaling pathway
scil04137
Mitophagy - animal
scil04140
Autophagy - animal
scil04148
Efferocytosis
scil04659
Th17 cell differentiation
scil04919
Thyroid hormone signaling pathway
scil05167
Kaposi sarcoma-associated herpesvirus infection
scil05200
Pathways in cancer
scil05205
Proteoglycans in cancer
scil05208
Chemical carcinogenesis - reactive oxygen species
scil05211
Renal cell carcinoma
scil05230
Central carbon metabolism in cancer
scil05231
Choline metabolism in cancer
scil05235
PD-L1 expression and PD-1 checkpoint pathway in cancer
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09130 Environmental Information Processing
09132 Signal transduction
04066 HIF-1 signaling pathway
308646327 (HIF1A)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
308646327 (HIF1A)
04137 Mitophagy - animal
308646327 (HIF1A)
04148 Efferocytosis
308646327 (HIF1A)
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
308646327 (HIF1A)
09152 Endocrine system
04919 Thyroid hormone signaling pathway
308646327 (HIF1A)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
308646327 (HIF1A)
05205 Proteoglycans in cancer
308646327 (HIF1A)
05208 Chemical carcinogenesis - reactive oxygen species
308646327 (HIF1A)
05230 Central carbon metabolism in cancer
308646327 (HIF1A)
05231 Choline metabolism in cancer
308646327 (HIF1A)
05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
308646327 (HIF1A)
09162 Cancer: specific types
05211 Renal cell carcinoma
308646327 (HIF1A)
09172 Infectious disease: viral
05167 Kaposi sarcoma-associated herpesvirus infection
308646327 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scil03000
]
308646327 (HIF1A)
Transcription factors [BR:
scil03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
308646327 (HIF1A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
DDRGK
Motif
Other DBs
NCBI-GeneID:
308646327
NCBI-ProteinID:
XP_081145220
LinkDB
All DBs
Position
4:157218728..157263747
Genome browser
AA seq
822 aa
AA seq
DB search
MEGAGGANDKKNRISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASV
MRLTISYLRVRKLLDAGDLDIEDEMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKY
MGLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTSRG
RTMNIKSATWKVLHCTGHIHVYDTNSNQSQCGYKKPPMTCLVLICEPIPHPSNIEIPLDS
KTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQ
VTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTEC
VLKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNDTE
TEDQQLEEVPLYNDVMFPSSSEKLQNINLAMSPLPASETPKPLRSSADPALNQEVALKLE
PNPESLELSFTMPQIQDQPASPSDGSTRQSSPEPNSPSEYCFDVDSDMVNVFKLELVEKL
FAEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSSSPQSVSTISVF
QQTQIQEPTINTTTATTDELKTVTKDDMEDIKILIASWSPTHAPKETTSATTSSYNDTQS
RTASPNRAGKGVIEQTEKSHPRSPNVVSVTLSQRNTVPEEELNPKILALQNAQRKRKMEH
DGSLFQAVGIGTLLQQPDDRATTTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLACRLLG
QSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgccggaggcgcgaacgacaagaaaaataggataagttctgaacgtcgaaaa
gaaaagtctagagatgcagccagatctcgacgaagcaaagagtctgaagttttttatgaa
cttgctcatcagttgccacttccccataacgtgagctcacatcttgataaggcttctgtt
atgaggcttaccatcagttatttgcgtgtgaggaaacttctggatgctggtgacctggat
attgaagatgagatgaaggcacagatgaactgcttttatttgaaagccctggatggcttt
gttatggtgctcacagatgatggcgacatgatttacatttctgataacgtgaacaaatac
atgggattaactcagtttgaactaactggacacagtgtgtttgattttactcatccgtgt
gaccatgaggaaatgagagaaatgcttacacacagaaatggccctgtgaaaaagggtaaa
gaacaaaacacacagcgaagcttttttctcagaatgaagtgtaccctgactagccgggga
agaactatgaacataaagtctgcaacatggaaggtacttcactgtacaggccatattcac
gtatatgataccaacagtaaccaatctcagtgtggatacaagaaaccaccaatgacatgc
ctggtattgatttgtgaacccattcctcatccatcaaatattgaaattcctttagacagc
aagacttttctcagtcgacacagtctggatatgaaattttcttactgtgatgaaagaatt
actgaattgatgggatatgagccagaggaacttttgggccgctcaatttatgaatattat
catgctttggactctgatcatctgaccaaaactcatcacgatatgtttactaaaggacaa
gtcaccacaggacagtataggatgcttgccaaaagaggtggatatgtctgggtagaaact
caagcaactgttatatataacaccaagaactctcaaccacaatgcattgtatgtgtaaat
tatgttgtaagtggtattattcagcacgacttgattttctcccttcaacaaactgaatgt
gtcctcaaaccagttgagtcttcagatatgaaaatgactcagctcttcaccaaagttgaa
tcagaggatacaagtagcctctttgataaacttaagaaggaacctgatgctttaactttg
ctggccccagctgctggagacacaatcatatctttagattttggcagcaatgacacagaa
actgaagaccaacaacttgaagaagttccactgtataatgatgtaatgttcccctcatcc
agtgagaaattacaaaatataaatctggccatgtctccattacctgcctctgaaactcca
aagccacttcgaagtagtgctgatccagcactcaatcaagaagttgcattaaaattagag
ccaaatccagagtcactggaactttcttttaccatgccccagattcaagatcaaccagcc
agtccttctgatggaagcaccagacagagttcacctgagcctaacagtcccagtgaatac
tgttttgacgtggatagtgatatggtcaatgtattcaagttggaattggtagagaaactt
tttgctgaagacacagaagcaaagaatccattttcaactcaggacactgatttagacttg
gagatgttggccccctatatcccaatggatgatgatttccagttacgttccttcgatcag
ctgtcaccattagaaagcagttcttcaagccctcaaagtgtgagcacaatttcagtattc
cagcagactcaaattcaagaacctactattaataccaccactgccaccactgatgaatta
aaaacagtgacaaaagatgatatggaagacattaaaatactgattgcatcttggtctccc
acccatgcacctaaagaaactactagtgccacaacatcatcatataatgatactcaaagt
cgaaccgcctcaccaaacagagcaggaaaaggagtcatagaacagacagaaaaatctcat
ccaagaagccctaacgtggtatctgtcactttgagtcaaagaaatacagttcctgaggaa
gaattaaatccaaagatattagctttgcagaatgctcagagaaagcgaaaaatggaacac
gatggttcactttttcaagcagtaggaattggcacactattacagcaaccagatgatcgt
gcaactactacatcactttcttggaaacgtgtaaaaggatgcaaatctagtgaacagaat
ggaatggagcaaaagacaattattttaataccctctgatttagcatgtagactgctgggg
caatcaatggatgagagtggattaccacagctgaccagttatgattgtgaagttaacgct
cctatacaaggcagcagaaacctactgcagggtgaagaattactcagagctttggatcaa
gttaactga
DBGET
integrated database retrieval system
