KEGG   Spermophilus citellus (European ground squirrel): 308646989
Entry
308646989         CDS       T11988                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
scil  Spermophilus citellus (European ground squirrel)
Pathway
scil03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:scil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    308646989 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scil03400]
    308646989 (TDP1)
DNA repair and recombination proteins [BR:scil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     308646989 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 308646989
NCBI-ProteinID: XP_081146779
LinkDB
Position
4:213545786..213622292
AA seq 608 aa
MSQEGSYGRWTISSSDESEDEKPKLDKPSTSSLSHAGQGTASEPRFNCSEARKAAHRRQT
SPVQFSSADLAPPPKKQKSGSQEELGWCLSSSDDELQPETQKKQVENVEVKEEKDLSSPK
DGAAQRTGNHGLPASHRHKREEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGIKPKYNC
KALHIKDILSPLFGTLVSSAQFNYCFDVVWLVKQYPPEFRKKPILLVHGDKREAKAHLHA
QAKPYENVSLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHEDWHQKTQGIWLSP
LYPRIGQQTHRSGESTTHFKADLISYLKAYNAPPLQEWIDTIQEHDLSDTNVYLIGSTPG
RFQGSQKDNWGHFRLRKLLREHTSSIPKAECWPIVGQFSSIGSLGADESKWLCSEFKESL
LGPGQDSKIPGKSTIPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHTW
SADTSGRSNAMPHIKTYMRPSPDFSRIAWFLVTSANLSKAAWGALEKNGAQLMIRSYELG
VLFLPSAFGLDSFKVKQKFFSGSREATDFFPVPYDLPPEPYGSKDRPWIWNIPYIKAPDT
HGNMWVPS
NT seq 1827 nt   +upstreamnt  +downstreamnt
atgtctcaggaaggcagttacgggaggtggaccatatctagtagcgatgaaagtgaggat
gagaagcccaaactggacaagccatcaacatcctctctctcccatgctgggcagggaaca
gccagtgagccacggttcaactgttccgaagctcgaaaagctgctcacaggaggcagaca
tcacctgtgcaattcagcagtgcagatttggctccacctcccaaaaagcagaaaagtggt
tcccaagaagagctaggctggtgtctctccagcagtgatgatgaactgcaaccagaaact
cagaagaagcaggtggagaatgtggaggtcaaagaggaaaaagacctctcctctcccaaa
gatggtgctgcccagagaactggaaatcatggccttcctgccagccacaggcacaaaaga
gaggaagacgagtatgagacctcaggggaaggccaagacatttgggacatgctagacaaa
ggaaaccccttccagttctatctcactagagtctcaggaattaagcccaagtacaactgc
aaagccctccacatcaaggatattttgtctcctctatttgggacacttgtttcttcagct
cagttcaactactgttttgatgtagtctggctcgtaaagcagtatccgccagagttcagg
aagaagccgatcctgcttgtgcatggtgataaacgggaagccaaggctcacctacatgcc
caagcaaaaccttatgagaacgtttccctctgccaggcaaagttggatattgcatttgga
acacaccacacgaagatgatgctactgctatacgaagaaggcctccgggttgtcatacac
acctccaacctcatccatgaagactggcaccagaaaacccaaggaatatggttgagcccc
ctatacccacgaattggccagcaaacccacagatctggagaatcaacaacgcattttaaa
gctgatctcatcagttacttgaaggcttacaatgcccctcctcttcaggagtggattgac
accatccaggagcacgatctctctgacacaaatgtttaccttattggttcaacccctgga
cgctttcaaggaagtcagaaggataattggggacattttaggcttaggaagcttctgaga
gaacacacctcgtcaatcccaaaagccgagtgctggcctatagtgggtcagttttccagc
attggctcactgggggctgatgaatccaaatggctgtgttctgagtttaaagagagcttg
ctgggccccgggcaggacagtaaaattccaggaaaaagcaccattcctcttcatttgatc
tatccttctgtggaaaatgttcggaccagcttagagggataccctgctggaggttctctt
ccctatagcatccagacagctgaaaaacagaattggctacattcctacttccacacgtgg
tcagccgacacatctggccgcagcaatgccatgcctcatattaaaacatacatgagaccc
tctccagacttcagtagaattgcttggttccttgtcacaagcgccaacctgtccaaggcc
gcttggggagcattggagaagaacggcgcccagctgatgatccgctcctacgagcttggg
gtgctcttcctcccgtcagcatttggcctggacagcttcaaagtgaaacagaaattcttc
tctggcagccgggaggcaacagacttttttccagtgccctatgatctgcccccagaacca
tacggaagtaaagatcggccatggatttggaacattccttatatcaaagcaccagataca
cacgggaacatgtgggtgccctcctga

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