Spermophilus citellus (European ground squirrel): 308648914
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Entry
308648914 CDS
T11988
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2 isoform 1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
scil Spermophilus citellus (European ground squirrel)
Pathway
scil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308648914 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scil03019
]
308648914 (SKIC2)
Enzymes [BR:
scil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
308648914 (SKIC2)
Messenger RNA biogenesis [BR:
scil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
308648914 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
308648914 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
308648914
NCBI-ProteinID:
XP_081150220
LinkDB
All DBs
Position
5:47615125..47625851
Genome browser
AA seq
1246 aa
AA seq
DB search
MLETERLVLPSPDPLNLPLRTVELGCTGRWELLNVPGTPESTLPHGLPPCAPDLHQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKTDPWSLLAAPGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLHRPPGPVSQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEDIDFE
KDLLTIPPGFKKGVNFAPKDHPAPAPGLLSLSRLLEPLDLGVGDEDEGEAKGESEGPRGD
SVSASTCSVPLARASSLEDLVLKEASTVISPPEPPKPPPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRARAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGALEEPDMTGQLVDLPEYYSWGEELTETRNMIQQRIIESVNGLKSLS
AGRVVVVKNQEHHNALGVILQVSSNSTSRIFTTLVLCDKLVSEDPQDKDPATPDVPHPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRVNGEKILEDFSKRQQPKFRKDPPLAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSPRF
SAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDQAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVQA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgttggagaccgagagacttgtgcttccttcccccgaccccctgaatctgccgcttcgg
acggtggaactgggatgcacggggcgctgggagctgctgaacgtgcctgggactccagag
agcacccttccccatggccttcctccctgtgccccagatctgcaccaagaagcagaacag
ttgtttctgtcctctccagcctggttgccactgcatggtgtggagcattcagctcgaaaa
tggcagaggaagacagatccctggtcactcctggctgccccgggggctccagttccatct
gaccttcaggcccaaagacacccaacaacaggccagatcctgggctacaaggaggtcctg
ctggagaacacaaacctgtcagccacaacctccttatctcttcaccggcctccagggcca
gtctcccagtctctatgggggaacccaacacagtaccctttctggccaggtgggatggat
gagcccaccataacagatctgagcactcgtgaggaggctgaggaggatatagactttgag
aaagatcttctcaccattccacctggctttaagaaaggcgtgaattttgcccccaaggat
cacccagctccagctcctgggctactcagccttagccgtctgctggagcctctagatttg
ggagtgggtgatgaggatgagggcgaggcaaagggagagtctgaaggtcccagaggggac
agtgtttcagcctctacttgcagtgttcctctggcccgggcaagcagcttggaggaccta
gtgttaaaggaagcatccacagtcatatccccgccagagcctcccaaacctccacctcag
gagcagtgggccattcctgtagatgtcacctcccctgttggtgatttctatcgtcttatt
ccccagccagccttccagtgggcatttgagccagatgtgtttcagaaacaagccatcctg
cacttggaacaacatgactctgtctttgtagcagctcacacatctgcggggaagacagtt
gtggctgaatatgccattgccctggcccaaaaacacatgacacgcaccatctacacttca
cctatcaaagccctgagcaatcagaagttccgggacttccgaaacacatttggggatgtg
gggcttctcactggggatgtgcagctccacccagaggcctcttgccttatcatgacgaca
gagatcctccgctccatgctgtacagtggctctgatgtcattcgggatctggagtgggtc
atctttgatgaggttcactatattaatgatgcagagcgtggggtcgtgtgggaggaggtg
ctcattatgctccctgaccatgtctccatcatccttctgagtgctaccgtccctaatgcc
ctggagtttgctgactggattgggagactgaagcgtcgccagatctatgtgatcagcact
gttgctcgccctgtgcccctggagcactatctcttcacagggaatagccccaagacccag
ggagagctctttctgctgctggactctcgaggggccttccataccaaggggtactatgca
gctgtagaggccaagaaggagagaatgagcaaacatgcccagacctttggggccaagcag
cccacacaccaggggggccctgcacaggaccgtggggtgtacctgtcactcctggcctcc
ctccgtgcccgggcccagctgcctgtggtagtgtttaccttctcccggggccgctgtgat
gagcaagcctcaggcctcacctcacttgaccttaccacgagttcagagaagagtgagatt
cacctctttctgcagcgttgccttgctcgtctcaggggctctgaccgccaactgcctcag
gtcctgcacatgtctgaactcctgcaccgtggcctgggtgtacaccacagtggcatcttg
cccattctcaaggagattgtggagatgctcttcagccgtggcctggtcaaggtcttgttt
gccacagagacctttgccatgggtgtaaacatgccagcacgtacagtggtgtttgactcc
atgcgtaagcatgatggctccactttccgggacctgctacctggggagtatgtacagatg
gctggccgggcaggccggaggggcttggaccccacaggcactgtcattcttctctgtaag
ggtcgtgtgcctgagatggcagatctgcaccgcatgatgatggggaagccatcccagctg
cagtcccagttccgcctcacatacactatgattctcaacctgcttcgggtagatgccctc
agggtggaggacatgatgaagaggagcttctctgagtttccatcccgtaaagacagcaag
gcccatgaacaggcactggctgaactaaccaagaggctgggtgccttggaggagcctgat
atgactggtcaattggtagacctaccagagtattacagctggggggaggaactgacagag
acccggaacatgatccagcaacgcatcatagagtcggtgaatgggctgaaatctctctcg
gcaggaagagtggtggttgtgaagaatcaggagcatcacaatgcactgggtgtgatcctg
caggtctcctcaaactccaccagcagaattttcacaaccctggtcttgtgtgataagctt
gtgtctgaggatccacaggacaaggatccagccactccagatgtgccccacccagatgac
ctagtaggctttaagctgttcctgcctgaaggaccctgtgaccatactgtggccaagctt
cagccaggagatgtggctgccatcaccaccaaggtgctccgggtgaatggtgagaagatc
ttggaggacttcagcaagaggcagcaaccaaaattcaggaaggatcctccccttgcagct
gtgaccactgctgtccaggaattgcttcgtctggctcaagcctacccagcaggacctccc
acccttgaccctgttaatgacctacagctcaaggatgtgtcagtggtagagggggggctc
cgggcccggaagctggaagagctaattcggggagcccagtgtgtacacagcccccgtttt
tctgcccagtatttgaagctgagggaacgaatgcagattcagaaggagatggagcggctg
cgcttcctactgtcagatcagtcactgctgctgctccctgagtatcaccagcgagtagag
gtactccgaacgctgggttacgtggaccaggcaggcactgtgaagttggcagggcgggtg
gcttgtgccatgagcagccatgaattgctcctcactgagctcatgtttgacaatgcactg
agtgccctgcgacctgaggagatcgcagccctgctttctggcctggtctgccagagtccc
ggggaccctggggatcagcttccaagcaccctcaagcagggagtagaacgcgtccaagcc
gtggcaaagcggattggtgaggtccaggtggcctgtggtctgaaccagacagtggaggaa
tttgtgggggagctgaattttggacttgttgaggttgtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctctcggggacccctgaaggcctggtggtccgctgcatc
cagcgcctggctgagatgtgtcgctcacttcgaggggcagcccgcctggtaggggagcct
gtgctgggagccaagatggagacagcagctaccctgttacgaagggacattgtctttgca
gctagcctttacacccagtga
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integrated database retrieval system
