Spermophilus citellus (European ground squirrel): 308650012
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Entry
308650012 CDS
T11988
Symbol
PEX6
Name
(RefSeq) peroxisome biogenesis factor 6 isoform 1
KO
K13339
peroxin-6 [EC:3.6.4.-]
Organism
scil
Spermophilus citellus (European ground squirrel)
Pathway
scil04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
308650012 (PEX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scil04131
]
308650012 (PEX6)
Membrane trafficking [BR:
scil04131
]
Autophagy
Pexophagy
Other pexophagy associated proteins
308650012 (PEX6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
DPBB_PEX6
PEX6_vert_N
AAA_16
AAA_22
AAA_33
AAA_lid_3
nSTAND3
AAA_11
AAA_5
RuvB_N
TIP49
NPHP3_N
TsaE
AAA_17
nSTAND_NTPase5
AAA_25
RNA_helicase
AAA_28
PEX6_4th
Mg_chelatase
AAA_30
AAA_14
Vps4_C
IstB_IS21
DUF815
Parvo_NS1
Motif
Other DBs
NCBI-GeneID:
308650012
NCBI-ProteinID:
XP_081152059
LinkDB
All DBs
Position
5:complement(58872947..58885964)
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AA seq
980 aa
AA seq
DB search
MVLAVLRVLEPFPTETSPLVVLLPPGGPWPAAGLGLVLALRPAGESPAGPALLVAALERP
GAETEEQGPGPPQLLVSRALLRLLALGPGAQVRARPVRRPPALGWALLGTSPGPGLGPRV
GPLLVRRGETLPVPGPRVLETRPALQGLLGPGTRLAVTELRGRNRLCPGTGDNSRPPPPP
VVSSFAVSGTVRQLRGVLGGTGDALGVSRSCLRGLSLFQGEWVWVTRAGELSNTSQPHLA
TVQVLQPRWDLSERLGPSSGQLAEPLADRTALVPATLAFNLGCDPMDVGELKIQRYLEGS
ITPEDKGSCSLLPRPPFARELHVEIVSSPHYSTNGSYDHALYQHFQTPRVVQEGDVLCVP
TFGQVEILEGSPEKLPRWREMFFKVKKTFGDAPDEPIRAYLADTTHTSLYMVGSTLSPVP
MLPSGESTLWNSLSPPGLEPLVTELCTALKPRLQPGGSLLTGTGCVLLRGPPGSGKTTAV
AAACSRLGLHFLKVPCSSLCADSSGAVEAKLQATFSRARRCRPVVLMLTAVDLLGRDRDG
LGEDARVVATLRHLLLNEDPLSSCPPLMVVATTSRAQDLPADVQTAFPHELEVPVLSEGQ
RLSILQALTTHLPLGQEVNLAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGVAGSWS
EEDEGELCAAGFPLLAEDFGQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILET
IQLPLEHPELLSLGLRRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQ
SEENVREVFSRARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTR
DVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLMN
VLDCCPPQLTGADLYSLCSDAMTTALKRKVHNLEEGLELASSALLLTMDDLLQAATRLQP
SVSEQELLRYKHIQHKFAAC
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggtgctggctgtcttgcgcgtcctggaacccttcccgaccgagacatcccctttggta
gtacttctgccgcccgggggcccatggcctgcggcggggctgggcctggttctggccctt
cggcctgcaggagagagtccagcagggccggctctgttagtggctgccctggaacggcca
ggtgctgagactgaggagcaaggtcctgggcccccgcagctgctggttagccgcgcactg
ttgcggctcctagcactgggccccggggcacaggtgcgggcgcggccggtgcgacggccc
ccggccctgggctgggcgctgcttggcacctcaccggggcctgggctcggaccacgagtc
ggtcctctgctagtgaggcgtggagagaccctgccggtgccggggccccgggtgttggag
acgcggccggcgttgcaaggactgctgggccccgggacgcggctggctgtaactgagctc
cgcgggcggaacagactgtgcccagggactggggataatagccggcccccgcccccgccg
gtggtgtcctccttcgctgtttccggcacagtccggcaactccgaggagttctgggaggg
actggagatgcactgggggtgagccggagctgtctccgtggtctcagcctcttccagggc
gagtgggtgtgggtaacccgggccggagagttatcgaacacttctcagccgcacttagcc
acggtgcaggtcctgcagcctcgctgggacctgtctgagagactgggacccagctccggg
cagctggcagagccgctcgctgaccgaacggccctcgtgcctgccactctggcttttaat
ctcggctgtgaccccatggacgtgggagagctcaagattcagagatacttggaaggctcc
atcacccccgaagacaaaggaagctgctcattgctgcctaggcctccatttgccagagag
ttacacgtcgaaattgtgtcctctccccactacagcactaatggaagttatgaccatgct
ctttaccagcactttcagacacccagggtggtacaggaaggggatgttctgtgtgtgcca
acgttcgggcaagtcgagatcctggaaggaagtccagagaagctgcccaggtggcgggaa
atgttttttaaagtgaagaaaacatttggggatgctccagatgaaccaatcagggcttac
ttggctgacaccacccatacctccttatacatggtgggttctaccttgagccctgtccca
atgcttccttcaggagaatccactctctggaatagcttgtctcctccgggtctggagccc
ttggtgactgagctttgtactgctctgaagccgcgccttcagccagggggatccctactg
acaggaactggctgtgtcctcctacggggcccaccaggcagtgggaaaaccacagcagtt
gcagctgcctgtagtcgccttgggctccactttctgaaggtgccctgctccagcctctgt
gcagacagcagtggggctgtggaggcaaaacttcaggccaccttctcccgggcacgccgc
tgccggcctgtagtgctaatgctgacagctgtggatcttctgggccgggaccgtgatggg
ctgggtgaggatgcccgtgtggtggccacactgcgtcacctcctcctcaatgaggacccc
ctaagcagttgccctcccctgatggttgtggccaccacaagccgggcccaggacctgcct
gctgatgtgcagacagcatttcctcatgagctagaggtgcctgtgctctcagaagggcaa
cggctcagcatcctgcaggccctcaccacccacctgcccctgggccaagaggtgaacctg
gcccagctagcacggcggtgtgcaggctttgtggtaggagatctctatgcccttctgact
cacagcagccgagcagcctgcaccaggatcaagaattcaggtgtggcaggcagctggagc
gaggaggatgagggggagctgtgcgctgctggcttcccccttctggctgaggactttggg
caggcactggagcaacttcagacagctcattcccaggccgttggagcacccaagattccc
tcagtgtcctggcatgatgtgggtgggctacaggaggtgaaaaaggagattctagagacc
atccagctccctctagagcaccctgagctcctgagcctgggcctaagacgctcgggcctc
ctgctccacgggccccctggcacaggcaagaccctccttgccaaggcagtagccactgaa
tgcagccttaccttcctcagtgtgaaggggccagaactcatcaacatgtacgtgggccaa
agtgaggaaaatgtacgagaagtcttttccagggccagggctgctgctccatgtatcatt
ttctttgatgaactggattccttggcccccagccgggggcgaagtggagactctggagga
gtgatggacagggtggtgtctcagctactggctgagctggatggacttcatagcactcgg
gatgtgtttgtgattggtgccaccaaccgaccagacctcttggaccctgcccttctacgg
cctggcagatttgacaagctggtgtttgtgggggcaaatgaggatcgggcctcccagctt
cgcgtcctaagtgccatcacacgcaagttcaagctagagccctccgtgagcctgatgaat
gtgctggattgctgccctccccaactgacgggggcagacctctattctctatgctctgat
gccatgacaactgcactcaaacgcaaggttcacaacctggaggaagggctggaattggcg
agctcagcactgttgcttaccatggatgacctgctacaggctgccacccgcctgcaaccc
tcagtcagtgagcaggagttgctccgctacaagcacatccagcacaagtttgctgcctgc
tag
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