Spermophilus citellus (European ground squirrel): 308652499
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Entry
308652499 CDS
T11988
Symbol
TNR
Name
(RefSeq) tenascin-R isoform 1
KO
K06252
tenascin
Organism
scil Spermophilus citellus (European ground squirrel)
Pathway
scil04151
PI3K-Akt signaling pathway
scil04510
Focal adhesion
scil04512
ECM-receptor interaction
scil04518
Integrin signaling
scil05165
Human papillomavirus infection
scil05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
308652499 (TNR)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
308652499 (TNR)
04518 Integrin signaling
308652499 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
308652499 (TNR)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
308652499 (TNR)
09172 Infectious disease: viral
05165 Human papillomavirus infection
308652499 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
scil00536
]
308652499 (TNR)
Glycosaminoglycan binding proteins [BR:
scil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308652499 (TNR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
EGF_2
Pur_ac_phosph_N
Fn3_PBP1
Fn3_VIN3
FN3_Tor_3rd
DUF7949
CBM_4_9
SPE9_EGF_3rd
Motif
Other DBs
NCBI-GeneID:
308652499
NCBI-ProteinID:
XP_081156466
LinkDB
All DBs
Position
6:<157611830..>157684663
Genome browser
AA seq
1358 aa
AA seq
DB search
MGADGETVVLKNMLIGVNLILLGSMLKPSECQLEVTTERVQRQAVEDEGGMGNYSTSSKE
QPMVFNHVYNINVPLDSLCSSGLEASAEQEVSAEDETLAEYTGQTSDHESQVTFTHRINL
PKKACPCAGSAQVLQELLSRIEMLEREVSVLRDQCATNCCQESTATGQLDYIPHCSGHGN
FSLESCGCICNEGWFGKNCSEPYCPLGCSSRGVCVDGQCICDSEYSGDDCSELRCPTDCS
SRGLCVDGECVCEEPYTGEDCRELRCPGDCSGKGTCANGTCLCQEGYVGEDCGQRRCLNA
CSGRGHCQEGLCVCEEGYQGPDCSAVAPPEDLRVAGISDRSLELEWDGPMAVTEYVISYQ
PTARGGLQLQQRVPGDWSGVTITELEPGLTYNISVYAVISNIPSLPITAKVATHLSTPQG
LQFKTITETTVEVQWEPFSFSFDGWEISFIPKNNEGGVIAQLPSDVTSFNQTGLKPGEEY
IVNVVALKEQARSPPTSASVSTVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGL
VGGEGGKTTFRLQPPLSQYSVQALRPGARYTVSVSAVRGANESASTTTEFTTEIDAPKNL
RVGSRTATSLDLEWDNSEAEVQEYKVVYSTLAGEQYHEVLVPKSIGPTTRATLTDLIPGT
EYGVGISAVMNSQQSVPATMNARTELDSPRDLMVTASSETSISLIWTKASGPIDHYRITF
TPSSGIASEVTVPKDRTSYTLTDLEPGAEYIISITAERGRQQSVESTVDAFTGFRPISHL
HFSHVTSSSVNITWSDPSPPADRLILNYSPRDEEEEMMEVSLDATKRHAVLKGLQPATEY
IVNLVAVHGTVTSEPIVGSITTGIDPPKDITISNVTKDSVVVSWSPPVASFDYYRVSYRP
TQVGRLDSSVVPNTVTEFTISRLHPATEYEISLNSVRGREESERICTLVHTAMDNPVDLI
ATNITPTEALLQWKAPAGDVENYVIVLTHFSVAGETILVDGVSEEFQLIDLLPSTHYTVT
MYATSGPLTSSTISTNFSTLLDPPANLTAGEVTRQSALISWQPPRAEIEKYVLTYRSTDG
SRKELIVDAEDTWIRLEGLSENTDYTVLLQAAQDATRSSITSTAFTTGGRVFSHPQDCAQ
HLMNGDALSGVYTIFLNGELSQKLPVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVG
FGSLEDEFWLGLDNIHRITSQGRYELRVDMRDGQEAAFAYYDKFSVEDGRSLYKLRIGSY
NGTAGDSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQG
INWYHWKGHEFSIPFVEMKMRPYNHHLTAGRKRRALWF
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgggggcagatggggaaacagtggtcctgaagaatatgctgatcggtgtcaacctgatc
cttctgggctccatgctcaagccctcagagtgtcagctggaggtgaccacggaaagagtc
cagaggcaggcagtggaggacgaaggaggcatgggcaactacagcacatccagcaaagag
cagcccatggtcttcaaccacgtgtacaacattaacgtacccctggacagcctctgctcc
tcggggttagaggcctcggccgagcaggaggtgagtgcggaagatgagactctggcagag
tacacagggcagacctcggaccacgagagccaggtcaccttcacccacaggatcaacctc
cccaaaaaggcctgcccgtgtgccggctccgcccaggtgctgcaggagctgctgagccgg
atcgagatgctggagagggaggtgtcagtgctgcgggaccagtgtgccaccaactgctgt
caagaaagcacggccacaggacaactggactacatccctcactgcagcggccacggcaac
tttagcctggagtcctgtggctgcatctgcaatgaaggctggtttggcaagaactgctca
gagccctactgcccgctgggctgctccagtcggggcgtgtgcgtggacggccagtgcatc
tgtgacagcgaatacagcggggacgactgctccgagctccggtgccccacggactgcagc
tcccgggggctgtgcgtggacggggagtgcgtctgtgaagagccctacacgggcgaggac
tgccgggagctgaggtgccccggcgactgctcagggaaggggacctgtgccaacggcacc
tgtttatgccaggagggctacgtcggtgaggactgcggccagcggcggtgtctgaatgcc
tgcagcgggcgagggcactgccaggaggggctctgcgtctgtgaagagggctaccagggc
cctgactgctcagcagttgcccctccagaggacttgcgagtggctggtatcagcgacagg
tcccttgagctggaatgggacgggccgatggcagtgacggaatatgtgatctcttaccag
ccgacggcccgggggggcctccagctccagcagcgggtgcctggagattggagtggtgtc
accatcacggagctggagccaggtctcacctacaacatcagcgtctacgctgtcattagc
aacatccccagccttcccatcactgccaaggtggccacccatctctccactcctcaaggg
ctgcaattcaagactattacggagacgaccgtggaggtgcagtgggagcccttctcattc
tccttcgatgggtgggagatcagcttcatcccaaagaacaatgaaggaggagtgattgct
cagcttccaagtgatgtcacctcctttaaccagactgggctaaagcctggggaggaatac
attgtcaatgtggtggccctgaaagaacaagcccggagccccccgacctcggccagcgtc
tccactgtcattgatgggcccacgcagatcctggttcgagatgtctctgacacagtcgcc
tttgtggagtggaccccacctcgggctaaagttgatttcattctcttgaaatatggcttg
gtgggcggggaaggcgggaagaccaccttccggctgcagcctcccctcagccagtattca
gtgcaagcgctgcggcccggcgcccgctacacggtgtcagtcagtgcggtccgaggggcc
aacgagagcgcgtccaccaccaccgagttcacaacagagattgatgcccccaagaattta
cgagtcggctcccgcacagcaaccagccttgaccttgagtgggataacagcgaggcagaa
gttcaggaatacaaggtcgtctacagcaccttggccggggagcaataccatgaggtgctg
gtccccaaaagcattggtccaaccaccagagccaccctcacagatctgatacctggcacc
gagtatggagttggaatatctgctgtcatgaactcacaacaaagcgtgccggccaccatg
aatgccaggacagaactggacagtccccgagacctcatggtgacagcttcctcagagacc
tccatctccctcatctggaccaaggccagtggccccattgaccactaccgaattaccttt
accccctcctctgggattgcctcagaagtcaccgtgcccaaggacagaacctcgtataca
ctgacagatctggagcctggggcagagtacatcatttccatcaccgcagagaggggtcgg
cagcagagcgtggagtccactgtggatgccttcacaggcttccgccccatctcccacttg
cacttttcccatgtgacctcctccagtgtcaacatcacctggagtgacccgtctccccca
gcagacagactcattttgaactacagcccccgggatgaagaggaagagatgatggaggtc
tccttggatgccaccaagagacacgctgtcctgaagggtctgcagccagccaccgagtat
atcgtgaacctggtggctgtccatggcacagtgacctcagagcccatcgtgggctccatc
accacaggaattgaccctcccaaagacatcacgatcagcaacgtgaccaaggactcagtg
gtggtgtcctggagccctcctgttgcatcttttgattactaccgagtgtcatatcgaccc
acccaagtaggacggctggacagctcagtggtgcccaacacagtgacagaattcaccatc
tccaggctgcacccagccactgaatatgaaatcagcctcaacagtgtgcggggcagggag
gagagcgagcgcatctgcactctggtgcacacagccatggataaccctgtggatctgatc
gctaccaacatcacccccacggaagccctgctgcagtggaaggctccagccggtgacgtg
gagaactatgtcattgtccttacacacttctcagttgctggagagaccatcttggttgat
ggagtcagtgaggaattccagctcatcgacctgcttccgagcacccactacaccgtcacc
atgtatgccaccagtggacctctcaccagcagcaccatcagcaccaacttttctaccctc
ctggaccctcccgcaaacctgactgccggtgaagtcaccagacagagcgcactgatctcc
tggcagccccccagggcggagatcgagaagtatgtcctaacgtacagatccacggatgga
agccgcaaggagctgatcgtggatgcagaggacacctggatccggctggaggggctgtcg
gagaacaccgactacacagtgctcctgcaggcggcccaggatgccaccaggagcagcatc
acctccactgccttcaccacagggggccgagtattctctcaccctcaagactgtgcccaa
catctgatgaatggagacgctctgagcggagtgtacaccatctttctcaacggggagctg
agccagaagttgccggtgtactgcgacatgaccacagacggcggtggctggatcgtattc
cagaggcggcagaacggccaaactgattttttccggaagtgggcggactaccgcgtgggt
ttcgggagcctggaggacgagttttggctagggctggacaacatacacaggatcacgtcc
cagggccgctacgagctgcgtgtggatatgcgagacggacaggaggcggcctttgcatac
tacgacaagttctccgtggaggacggcaggagcctgtacaaactccgcatcggaagctac
aatggcactgcaggggactccctcagctatcaccagggccgcccgttctccacagaggac
cgagacaatgacgtggcagttaccaactgcgccatgtcgtacaagggagcttggtggtat
aagaactgccaccggaccaacctcaacgggaagtatggggagtccaggcacagtcagggg
atcaactggtaccactggaaaggccacgagttctccatccccttcgtggaaatgaagatg
cggccctacaaccaccatctcaccgcggggaggaagcggcgggccctatggttctaa
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