Spermophilus citellus (European ground squirrel): 308653085
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Entry
308653085 CDS
T11988
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform 1
KO
K06823
collagen type XVIII alpha
Organism
scil Spermophilus citellus (European ground squirrel)
Pathway
scil04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
308653085 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scil04147
]
308653085 (COL18A1)
00535 Proteoglycans [BR:
scil00535
]
308653085 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
scil00536
]
308653085 (COL18A1)
Exosome [BR:
scil04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
308653085 (COL18A1)
Proteoglycans [BR:
scil00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
308653085 (COL18A1)
Glycosaminoglycan binding proteins [BR:
scil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308653085 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF959
Endostatin
Collagen
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
308653085
NCBI-ProteinID:
XP_081157602
LinkDB
All DBs
Position
7:165063819..165150797
Genome browser
AA seq
1756 aa
AA seq
DB search
MAPDPSRRLGRLLLLLTCCLVPSWANLLTLDWLWSTDIADSKDTLVSQPQGSLPVQPAAA
PATHVAPQDDPAEQRTAPASPRPPLENPKAAPSRAPGAPISAAAPAASPDTREENVAGVG
AKILSIAQGIQSIVQLWNEATPTQSSAGSASAPTDPLALAGPSGPPEESRTTLGPHRGAP
GSLGTWTAESGTLAVPTQSPPSLDRLQAPLRGHSGPRESPGRASLSSALGRDPPWGSQMS
PGRPQHLNGKGHLLAAAGPSQPHGRPAFGSPLLLPLVTGPPGPPGAHSALPALSTHPVAQ
LSPAAVAALTGNRGAWVSHVADSAGPGLANNSALLGAGPPTPTGRCLPLPPTLPICGHLG
LERFWLPNHLHHESGEEVQAAARAWGGLLQTRCHPFLTWFFCLLLAPPCGQGPPPALPPC
RQFCEALQDACWSRLDGGRLPVACALLPAQEDGHCVFIGPAADSVREEVGLPQLLGEPPP
QQITQMEDPDVGLAYVFGPDTNSGQVAQYHVPSPFFPDFSLLFHIRPATEGPGVLFALTD
AAQAVVLLGVKLSGVRDGHQDISLLYTEPGNSQTRTAASFRLPAFVGQWTRLALSVDGSS
VALYVDCEEFQRLPFARSPRGLELEPGAGLFVGQAGVADPDKFQGTMAELTVRGDPQVSP
LRCLDQEDDDEDGSSGDAGSGLDEEEDQRRREGAGVALRPSLPQPPPVTSPPLASGSSTE
DSRSEEIRAGTTEAPPEVQTLPGSDLEGTRDESARRPGSSLERGGLKGQKGEPGVHGLPG
PVGPPGPAGPVVQGSNAQPVPGAQGPPGPPGPPGKDGAPGRDGEPGDPGEDGKPGDTGPQ
GFPGTPGDMGLKGEKGDPGIGPRGPPGPPGPPGPSLRHDKLTFIDMEGSGFGGDLESLRG
PRGFPGPPGPPGVPGLPGEPGRFGMNSSHVPGPAGLPGVPGRDGSPGFPGPPGPPGAPGK
EGPPGKTGQKGSRGDTGAPGPKGSKGDPGPVGAPGESGFVGAPGPAGPPGPPGPPGPPGP
GLAAGFDDMEGSGAPFWSTARGSEGPQGPPGPPGLKGDPGAGGPPGAKGEVGADGARGFP
GLPGREGTAGPPGPKGDKGSPGERGDPGKDGVGQPGLPGPPGPPGPVVYVSDQDGAVTSA
PGPEGRPGFAGFPGPAGPKGDPGSRGEQGFPGPKGEKGEPGGVLGPDGRTLGPAQKGAKG
EPGFRGPPGPYGRPGYKGEIGIPGRPGRPGVNGLKGEKGEPGDASLGLGMRGMPGPPGPP
GPPGPPGVPIYDSNAFVESGHPGPRGLQGLPGPSGPKGDKGEVGPPGPPGQFPVDFLSLE
AEMKGEKGDLGDTGQKGEKGEPGASGGVFSSSVPGPPGPPGPPGYPGIPGPKGESIQGQP
GPPGPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPPGPPGPPGTM
GTSSGVRIWATYQTMLDRARELPEGWLVFVAEREELYVRVRNGFRKVLLEARIPLPSSTD
NEVAVRQPPVVQLHEGNPYPRREHSYSTVRPWRADDTLASPQRLPDPQPYPGAPHHHGSY
VHLRPARPTASPAHTHQDFQPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAGTFR
AFLSSRLQDLYSIVRRADRGTVPIVNLKDEVLAPSWEALFSGSGGQLKPGARIFSFDGRD
ILRHPAWPQKSVWHGSDPSGRRLTESYCEAWRTEAAGAMGQASPLLAGRLLEQEATSCRN
AHVVLCIENSFMTSSS
NT seq
5271 nt
NT seq
+upstream
nt +downstream
nt
atggccccggaccccagcagacgccttggccggctgctgctgctgctcacctgctgcctt
gtgccctcctgggccaacctgctgaccctggactggctgtggtccaccgacatcgccgac
tccaaagacacactggtctcccagccccagggcagcctgcccgtgcagcctgcagcggcc
cccgccacacacgtggccccccaggatgaccccgcggagcagaggacggcccctgccagc
cccaggccacccttggagaatccgaaggccgccccaagcagggctcccggcgctcccatc
agtgccgccgcccccgccgcaagcccggacacgagggaggagaacgtcgcgggagtggga
gccaagatcctgagcatagcccagggcatccagagcatcgtccagctgtggaacgaggcc
acccctacccagagctctgccggctccgcctcggcccctacggaccctctggccctcgcg
gggccctccggcccgcccgaggagagcaggaccaccctcgggcctcacagaggcgctccg
ggctctctgggcacctggacggccgagtctggcactctggctgtgcccacccagtcgcct
ccctccctggacaggctccaggcaccactgagggggcactcagggccacgggagtcccca
ggtagagcttctctctcctccgcgctgggcagggaccctccctgggggagccagatgtcc
ccagggaggccccagcatctgaatgggaaaggacacttgcttgcagcagctggtcccagc
cagccccacggtcgccctgcgtttggctcgcctctcctgcttcccctggtgacgggtcct
cctggtcctcctggtgcgcacagtgccctccctgctctttccacacaccctgtggcccag
ctgtcccctgcagccgtggcagctttaacggggaaccgtggtgcttgggtttcccacgtg
gctgattctgcggggcctggtctcgctaataactctgcactgctgggggctggccctccg
actcccactggccgctgcctgcccctgccgcccaccctgcccatctgcggccacctgggc
ctagagcgcttctggctgcccaaccatctccaccatgagagcggcgaggaggtgcaggcc
gctgcgcgggcgtgggggggcctcctccaaacacgctgccaccccttcctcacctggttc
ttctgcctgctgctggccccgccctgtggccagggccccccgcccgccctgccgccctgc
cgccagttctgtgaggctctgcaggatgcgtgctggagccgcctagacgggggccggctg
ccggtcgcctgtgccttgctccctgcccaagaggatgggcactgtgtgttcattgggcca
gctgcagacagtgtccgtgaggaggtggggctgccgcaactccttggagagcccccgccc
cagcagatcacccagatggaggaccccgacgtcgggctagcctatgtctttggaccagac
accaacagcggccaggtggcccagtaccacgtgcccagccccttcttccctgacttctcg
ctgctgttccacatccgaccagccacagagggccccggggtgctgtttgccctcacggac
gcggcgcaggctgtggtcctgctgggcgtgaagctctcaggggtgcgtgatgggcaccag
gacatctcactgctctacaccgagccgggcaacagccagacccgcacagcggccagcttc
cgcctgcctgcctttgtgggccagtggacacgcttggcgctcagcgtggacggcagctct
gtggctctgtacgtggactgcgaggagttccaacggctgccgtttgctcggtctccacgg
ggcctggagctggagcctggcgctggcctctttgtggggcaggccggggttgccgacccc
gacaagttccagggaacgatggcagagctgacagtgcgtggggatccccaggtgagcccc
ctgcgctgcctggaccaggaggacgatgacgaggatgggtcatcaggagacgctggaagt
ggcctagacgaggaggaggaccagcgtcgcagggagggagcgggcgtggccctgagaccc
agcctcccccagcctcccccggtcacctctccccccttggccagcggcagcagcacggaa
gattctagaagtgaagagatcagggcaggcaccacagaggctccgccagaagttcagacc
ctccctggctcagatttggaaggcactagggatgagagtgcccggcgccctggaagcagc
ctggaaaggggaggcctgaagggacaaaagggtgagccgggagttcacggcctgcctggc
cccgtcggtcctccaggtcctgcaggcccagtggtgcagggttccaatgcacagcctgtc
cctggggcacagggacccccgggacctccagggccaccagggaaggatggtgccccagga
agggatggtgagccgggagacccgggggaagacggaaagcccggtgacactgggccccag
ggctttccggggactccaggagacatgggcctcaagggggagaagggagatcctgggatc
gggccgagaggacccccaggacccccagggccaccaggaccctccctcagacatgacaag
ctgaccttcattgacatggaaggctccggctttggaggtgacctggagagcctccggggc
ccacgtggcttccctggcccccccgggcctccgggtgtcccaggcctgcctggcgagcct
ggccgctttggcatgaacagctcccatgttccgggacctgctggccttcctggagttcct
gggcgtgacggatcccctgggtttccaggccccccgggcccgcccggtgctccaggaaaa
gagggtccaccaggaaagaccggccagaaaggcagtcgtggtgacacaggcgccccagga
cccaagggaagcaagggagaccctggccctgttggtgctcccggggagagcggcttcgta
ggagcccctggtcccgctggacctccaggaccaccgggcccccctgggccaccaggacca
ggacttgctgctggatttgacgacatggaaggctccggagcacctttctggtcgacagcc
cgcggctctgaggggccacagggaccccccggcccgccaggactcaagggggatcctgga
gccggcgggccacctggggccaagggggaagttggagccgacggagcccgcgggttccct
ggcctccctggcagagaaggcacggcagggcccccgggacctaaaggagacaaagggagc
cccggagaaagaggtgacccaggaaaggatggagtgggacaaccaggcctgcctgggccc
ccaggacccccagggcccgtggtctacgtgtctgatcaggacggagcagtgaccagtgcc
ccggggcctgagggcaggccgggcttcgcaggcttccctggacctgctggaccaaagggc
gacccgggctccagaggcgagcagggcttcccaggacccaagggggagaagggagagcct
ggcggtgtcttgggccctgacggcagaaccctgggccctgcccagaaaggagccaaggga
gagccgggcttccgaggacccccgggtccgtatgggcggcctgggtacaagggtgagatc
ggcatccctggacgaccgggtcgccctggggtgaatgggctgaagggagagaagggggaa
cctggagacgccagcctcggacttggaatgaggggcatgcccggccccccagggcctcca
gggcccccaggccctccaggggtgcccatctacgacagcaacgcatttgtggagtctggc
caccctgggccgcggggactgcaagggctgccaggaccttctggacccaagggtgacaaa
ggagaagtgggaccacctggacctccagggcagttccccgtggacttcctcagcctggaa
gccgagatgaagggagagaagggggacctgggggacacaggacagaaaggagagaagggg
gagccaggggccagcggcggagtcttcagctcaagtgtgcctggacccccaggtcccccc
ggcccaccaggctaccctgggattccgggtccaaagggagagagcatccagggccagccg
ggcccacccggacctcagggacctcctggcattggctatgaggggcgccagggccctcct
gggcccccaggcccccctggccccccggggcccccgtcattccctggtcctcacaggcag
actgtcagtgtccctggccccccaggcccacctggccccccagggcccccgggaaccatg
ggcacctcttcaggggtgaggatctgggccacctaccagaccatgctggacagggcacga
gagctgcccgagggctggctcgtctttgtggctgagagggaggaactctatgtacgggtc
cgaaacgggttccggaaagttctgctggaggcccggatccctctgccatccagcacggac
aatgaagtggctgtccgccagcccccagtggtgcagctgcatgagggcaacccatatccc
cggcgggagcactcctactccaccgtgcgcccctggagagcagacgacaccctggccagc
ccccagcgccttccagatccccagccctaccctggagctccacaccaccacggctcctat
gtgcatctccggccagcccgccccacagcctcacctgcccacacccaccaggacttccag
ccggtgctccacctggtcgcactcaacagcccactctcgggcggcatgcgcggcatccga
ggggccgacttccagtgcttccagcaagcgcgagctgtggggctggctggcaccttccgt
gccttcttgtcctcgcggctgcaggacctctacagcatcgtgcgccgtgctgaccgtggg
accgttcccatcgtcaacctcaaggatgaagttctggctcccagctgggaggccctgttt
tcaggctccgggggccagctgaagcccggggcccgtatcttctctttcgacggcagggac
atcctgaggcaccctgcctggccccagaagagtgtatggcatggctcagaccccagtggg
cgcaggctgaccgagagctactgtgaggcgtggcggacagaggctgccggagccatgggc
caggcatccccactgctggcaggcagactgctggaacaggaagccacaagctgccgcaat
gcccatgtggtcctctgcatcgagaacagtttcatgacctcctcctcctaa
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