Spermophilus citellus (European ground squirrel): 308655243
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Entry
308655243 CDS
T11988
Symbol
PRDM16
Name
(RefSeq) histone-lysine N-methyltransferase PRDM16 isoform 1
KO
K22410
[histone H3]-lysine9 N-methyltransferase [EC:
2.1.1.367
]
Organism
scil
Spermophilus citellus (European ground squirrel)
Pathway
scil00310
Lysine degradation
scil01100
Metabolic pathways
scil04714
Thermogenesis
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
308655243 (PRDM16)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
308655243 (PRDM16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scil03000
]
308655243 (PRDM16)
03036 Chromosome and associated proteins [BR:
scil03036
]
308655243 (PRDM16)
Enzymes [BR:
scil01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.367 [histone H3]-lysine9 N-methyltransferase
308655243 (PRDM16)
Transcription factors [BR:
scil03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
308655243 (PRDM16)
Chromosome and associated proteins [BR:
scil03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
308655243 (PRDM16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
PRDM2_PR
zf-C2H2_6
zf-C2H2_jaz
SET
zf-C2H2_11
zf-H2C2_5
Zap1_zf1
zf-BED
zf-C2H2_15
C2CH-4th_BIRD-IDD
Motif
Other DBs
NCBI-GeneID:
308655243
NCBI-ProteinID:
XP_081161316
LinkDB
All DBs
Position
9:complement(137613869..137942011)
Genome browser
AA seq
1272 aa
AA seq
DB search
MRSKARARKLAKSDGDIVNNMYEPDPDLLAGQSAEEETEDSILSPIPMGPPSPFPTSEDF
TPKEGSPYEAPVYIPEDIPIPPDFELRESSIPGAGLGIWAKRKMEVGERLGPCVAAPRAA
LKEADFGWEQMLTDPEVPSQEGCLRKISEDLGSEKFCVDASQVGAGSWLKYVRVACSCDD
QNLSMCQINEQIYYKVIKDIEPGEELLVHVKESGYSLSAVPPSLDEEPTFRCDECDELFP
CKVDLRRHKKYACGSAGTAVYQGLGEGLKPEGLGGGGSDPSHECKDCERMFPTKYSLEQH
MIVHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKRFECENCVKVFTDPSNLQRHIRSQ
HVGARAHACPDCGKTFATSSGLKQHKHIHSTVKPFICEVCHKSYTQFSNLCRHKRMHADC
RTQIKCKDCGQMFSTTSSLNKHRRFCEGKSHYTPGGLFAPGLPLTPSPLMDKAKPSPNLN
HTGLGFNEYFPSRPHPGSLPFSTGPPAFPALTPGFPGIFPPSLYPRPPLLPPTPLLKSPL
NHTQDAKLPSPLGNPALPLISAVSNSGQGATAATGPEEKLESRLEDTYVDKLKTRSPDMS
DGSDFEDINTTTGTDLDTTTGTGSDLDSDVDSDRDKGKDKGKPEFGGGSVPPGSTHSGAE
VPVFYSQHSFFPPPEEQLLTASGAAGDSIKAIASIAEKYFGPGFMGMQEKKLGALPYHSV
FPFQFLPNFPHSLYPFTDRALAHNLLVKAEPKSPRDTLKVGGPSAECPFDLTTKPKEAKP
ILPAPKVPPAPVSSEEQPLDLSIGSRARASQNGGGREPRKNHIYGERKPGAGEGLPKVCP
AQLPQQPSLHYAKPSPFFMDPIYSRVEKRKVTDPVGVLKEKYLRPSPLLFHPQMSAIETM
TEKLESFAAMKADSGGSLQPLPHHPFNFRSPPPTLSDPILRKGKERYTCRYCGKIFPRSA
NLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLD
RHLKKHEHEGAPVSQHAGVLTNHLGTSASSPTSESDNHALLDEKEDSYFSEIRNFIANSE
MSQASSRTDKRPEIQELGSNPQCPGLASEKPEDVEEEEEEELEEEDEDSLAGKSQDDTVS
PTPEPQGVYEDEEDEETPASLAVGFDHTRRCLEEPEGGLSALEPTPAFGKGLDLHRAAEE
AFEVKDVLNSTLDSEALKQTLYRQAKNQAYAMMLSLSEDAPLHAPSQSSLDAWLNIAGAT
SEPGAFNPINHL
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgcgatccaaggcgagggcgaggaagctagccaaaagtgacggtgacattgtaaataat
atgtatgagcccgacccggacctgctggctggccagagtgctgaggaggagacggaggac
agcatcctgtctcccatccccatggggccaccgtcccccttccccaccagtgaggacttc
acccccaaggagggctcgccctacgaggctcccgtctacattcccgaagacattccgatc
ccgccagacttcgagctgcgagagtcctccatcccgggggccggcctggggatctgggcc
aagaggaagatggaggtcggggagaggctcggcccctgtgtggcggcgccccgggcggcg
ctgaaggaggccgactttggatgggagcaaatgctcacggatcccgaggtgccgtcccag
gaaggctgcctccgaaagatctctgaagacctgggcagcgagaagttctgcgtggatgcc
agccaggtgggggccggcagctggctcaagtacgtccgtgtggcctgctcctgtgatgac
cagaacctctccatgtgtcagatcaacgagcagatttattataaagtcattaaggacatt
gagccgggtgaggagctgttggtgcacgtgaaggaaagtggctactccctcagcgcggtg
ccacccagcctggatgaggagcccacgttccgctgtgacgagtgtgacgagctcttcccg
tgcaaggtggacctgcggcgccacaagaaatacgcctgcggctctgcggggactgccgtc
taccagggcctgggggaggggctcaagcctgagggcctcggtggcgggggcagcgacccc
tcccacgagtgcaaggactgcgagcggatgttccccaccaagtacagcttggagcagcac
atgatcgtccacacagaggagcgggagtacaagtgtgaccagtgtcccaaggccttcaac
tggaagtccaacctcatccgccaccagatgtcccatgacagtggcaagcgctttgaatgt
gaaaactgcgtgaaggtgttcacggaccccagcaacctgcagcggcacatccgctcgcag
cacgtgggcgcccgggcgcacgcctgccccgactgcggcaagaccttcgccacgtcctct
ggcctcaagcagcacaagcacatccacagcaccgtcaagcccttcatatgtgaggtctgc
cacaagtcctacacgcagttctccaacctgtgccggcacaagcgcatgcacgcggactgc
cgcacgcagatcaagtgcaaggactgtgggcagatgttcagcactacctcctccctgaac
aagcaccggcgcttctgcgagggcaagagccattacacgccgggcggcctcttcgcccca
ggcctgcccttgacccccagccccctgatggacaaggcaaagccctcccccaatctcaac
cacactggcctgggcttcaatgagtacttcccctccaggccccaccccgggagcctgccc
ttctccacgggccccccggccttccctgcactcacgcccggcttcccgggcatcttccct
ccatccttgtacccccggccgcctctgctacctcccacaccattgctcaagagccccctg
aaccacacacaggacgccaagctccccagccccctggggaacccagcactgcccctcatc
tccgcggtcagcaacagcggccagggcgccacggcggccacggggccggaggagaagttg
gagagccgcctggaggacacgtacgtggacaagctcaagaccaggagccccgacatgtcc
gatggcagcgactttgaggacatcaacaccacgacagggactgacctggacaccacaacg
gggactggctcggacctggacagcgacgtggacagtgaccgagacaagggcaaggacaag
ggcaagcccgagtttggcggcggctcggtgcccccagggtccacccacagtggggccgag
gtgcccgtcttctactcacagcactccttcttcccgcctcccgaggagcagctgctgacc
gcctcgggcgccgccggagactccatcaaagccatcgcgtccatcgcggagaagtacttt
ggcccgggcttcatgggcatgcaggagaagaagctgggcgcgctgccctaccactctgtg
ttccccttccagttcctgcccaacttcccccactccctgtaccccttcacggaccgcgcc
ctcgcccacaacctgctggtcaaggccgagccaaagtcgccccgggacacactcaaggtg
ggcggccccagtgccgagtgccccttcgacctcaccaccaaaccaaaagaggcgaagccc
atcctgcctgcgcccaaggtgcccccggcacccgtgtccagcgaggagcagcccctggac
ttgagcatcggcagccgggcccgcgccagccagaacggagggggccgggagccccggaag
aaccacatctacggggagcggaagccaggggccggcgaggggctgcccaaggtgtgccca
gcgcagctgccccagcagccctccctgcactacgccaagccctctcccttcttcatggac
cccatttacagcagggtagaaaagcggaaggtgacggaccccgtgggtgtcctgaaggag
aagtacctgaggccgtccccgctgctgtttcacccccagatgtcagccatcgagaccatg
acagagaagctggagagcttcgcagccatgaaagcagactcggggggctcgctgcagccc
ctgccccaccaccccttcaacttccggtccccacccccgacgctctcggaccccatcctc
aggaagggcaaggagcggtacacgtgcaggtactgtggcaagatcttcccccggtcagca
aatctcacgagacacctgaggacgcacaccggggagcagccgtacaggtgcaagtactgc
gaccgctccttcagcatctcctccaacctccagcggcacgtgcgcaacatccacaacaag
gagaagcccttcaagtgccacctgtgcaaccgctgcttcgggcagcagaccaacctggac
aggcacctcaagaagcatgagcacgagggcgcgccagtgagccagcacgcgggggtcctc
acgaaccacctgggcaccagtgcctcttccccgacctccgagtcggacaaccacgcactt
ttagacgagaaagaggactcctacttctctgaaatcaggaacttcattgccaacagcgag
atgagccaggcatcctcgagaacagacaagcggccagagatccaggagctgggcagcaac
ccccagtgtccaggcttagccagcgagaagccagaggatgtggaggaggaggaagaggag
gagctggaagaggaggacgaggacagcctggccgggaagtcgcaggacgacacggtgtcc
cccacgcccgagccccagggagtctacgaggacgaggaggacgaggagacacccgcctcc
ctggccgtgggctttgaccacacccgaaggtgtcttgaggagccagagggcggcctgtca
gctttggagccgacgccggcctttgggaaggggctggatctccacagagcagctgaggaa
gcatttgaagttaaagatgtgcttaattccaccttagattctgaggctttaaaacagacc
ctgtacaggcaggctaagaaccaggcatatgcaatgatgctgtccctttccgaggatgct
cctctccacgccccctcccagagctcgctggacgcttggttgaacatcgcaggagccacg
tcggagcctggagcctttaaccccatcaaccacctctga
DBGET
integrated database retrieval system
