Spermophilus citellus (European ground squirrel): 308656999
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Entry
308656999 CDS
T11988
Symbol
SOX1
Name
(RefSeq) transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
scil Spermophilus citellus (European ground squirrel)
Brite
KEGG Orthology (KO) [BR:
scil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scil03000
]
308656999 (SOX1)
Transcription factors [BR:
scil03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
308656999 (SOX1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
308656999
NCBI-ProteinID:
XP_081164564
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All DBs
Position
1:complement(<1670155..>1671327)
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AA seq
390 aa
AA seq
DB search
MYSMMMETDLHSPGGAQAPTNLSGPAGTGGGGGGGGGGGGGGAKANQDRVKRPMNAFMVW
SRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYR
PRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAAGGGY
AHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAHPHPHHPHAHPH
NPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAAAAAAAAGGAHQNSAVAAAA
AAAAASSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPAGEGGDPAAAAA
AAAQSRLHSLPQHYQGAGAGVNGTVPLTHI
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggaaaccgacctgcactcgcccggcggcgcccaggccccaacg
aacctctcaggcccagccgggacaggcggcgggggcggaggcggcggcgggggcggcggc
gggggcgccaaggccaaccaggaccgggtcaagcggcccatgaacgccttcatggtgtgg
tcccgcgggcagcggcgcaaaatggcccaggagaatcccaaaatgcacaactcggagatc
agcaagcgcctgggggccgagtggaaggtcatgtccgaggccgagaagcggccgttcatc
gacgaggccaagcggctccgcgcgctgcacatgaaggagcacccggattacaagtaccgg
ccgcgccgcaagaccaagacgctgctcaagaaggacaagtactcgctggccggggggctg
ctggcggccggcgctggcggcggtggtgcggcggtggccatgggcgtgggtgtgggcgtg
ggcgctgcggcggtgggccagcgcctggagagtccgggcggcgcggcgggcggcggctac
gcgcacgtcaacggctgggccaacggcgcctaccctggctctgtggcggcggcggcagcg
gccgcggccatgatgcaggaggcgcagctggcctacgggcagcaccccggcgcgggcggc
gcgcacccgcacgcgcaccccgcgcacccgcacccgcaccacccgcacgcgcacccgcac
aacccacagcccatgcaccgctacgacatgggcgcgctgcagtacagtcccatctccaac
tcgcagggctacatgagcgcttcgccttcgggctacggcggccttccttacggcgccgcc
gccgccgctgccgctgccgcgggcggcgcgcaccagaactcggcggtggcggcggcggct
gccgccgcggcagcgtcgtcgggtgccctgggtgcgctcggctcgctggtcaagtcggaa
ccgagcggcagcccgccggccccggcacactcgcgggcaccttgtcctggggacctgcgg
gagatgatcagcatgtacttgcctgccggcgagggtggcgacccggcggcggccgcggcg
gccgcggcgcagagccggctgcactcgctgccgcaacactaccagggcgcgggtgcgggc
gtcaatggcacggtgcccctgacgcacatctag
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