Streptomyces cinnabarinus: STRCI_000605
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Entry
STRCI_000605 CDS
T08957
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
scir
Streptomyces cinnabarinus
Pathway
scir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STRCI_000605 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scir03021
]
STRCI_000605 (rho)
03019 Messenger RNA biogenesis [BR:
scir03019
]
STRCI_000605 (rho)
Transcription machinery [BR:
scir03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
STRCI_000605 (rho)
Messenger RNA biogenesis [BR:
scir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
STRCI_000605 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
DUF3086
Spore_III_AA
AAA_16
ATPase_2
NACHT
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WAZ19547
UniProt:
A0ABY7K4Y6
LinkDB
All DBs
Position
644134..645261
Genome browser
AA seq
375 aa
AA seq
DB search
MTTTLEPPVQNSVPATVIGVLDIDASGKGHLRAADSLLPTSSDLQVPAALIRRHGLRKGD
LVEGVRGDRRTLTGIARVNSRAPERDRRRFADLTPLHPSERIRLEHPAAGLTGRVTDLIA
PVGKGQRGLIVAPPKTGKTVLLQQIAAAVAGNHPECRLMVVLLDERPEEVTEMRRSVRGE
VYASTFDRAPKQHIALAELVIERAKRLVEAGEDVVILLDSLTRLCRAHNNAAAAGGRTLS
GGVDASALIGPKRFFGAARAAEEGGSLTILATALVETGSRADDYFFEELKSTGNMELRLN
RDLASRRVFPAIDITPSGTRREELLLTTPELTAVHGLRRVLQAKDGLETLLERMRETPDN
ATFLRRIQPTLPKAA
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacactcgaacccccagtccaaaactccgtgcccgcgaccgtcatcggcgtg
ctcgacatcgacgcgagcgggaaggggcacctgcgggccgccgacagcctgctgcccacc
tcctccgacctccaggtccccgccgccctgatccgccgccacggcctgcgcaagggcgac
ctcgtcgaaggtgtacgaggcgaccggcggaccctgaccgggatcgcccgcgtcaacagc
cgagcccccgaacgcgaccgacgccgcttcgccgacctgacaccccttcacccgagcgag
cgcattcgcctcgaacacccggcagcaggcctgaccggacgcgtcaccgacctgatcgcc
ccggtcggcaagggccagcggggactgatcgtggccccgcccaagaccggcaagacggtg
ctgctccagcagatcgccgcggccgtggccggcaatcaccccgagtgccgcctgatggtg
gtactgctcgacgaacgccccgaggaagtcaccgagatgcggcgctccgtgcgcggcgag
gtgtacgcctcgacgttcgaccgggcgcccaagcagcacatcgcgctcgccgaactcgtc
atcgaacgggccaagcggctcgtcgaggcgggcgaggacgtggtgatcctgctcgactcg
ctgacccggctctgccgggcccacaacaacgcggccgccgcgggtggccgcaccctcagc
ggcggtgtcgacgcctccgcgctcatcggccccaagcggttcttcggcgccgcgcgggcc
gccgaggagggcggctcgctcacgatcctcgccaccgccctggtggagaccggctcccgc
gccgacgactacttcttcgaggagctcaagagcaccggcaacatggagctccgcctgaac
cgcgacctggcctcccgccgcgtcttccccgccatcgacatcaccccctccggcacccgc
cgcgaggaactcctcctgaccacccccgagttgaccgccgtacacggcctgcgccgggtc
ctccaggccaaggacggcctggagaccctgctggaacggatgcgcgagacgccggacaac
gcgacgttcctgaggcggatccagccgacgctgccgaaggcggcgtga
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