Streptomyces cinnabarinus: STRCI_005368
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Entry
STRCI_005368 CDS
T08957
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
scir
Streptomyces cinnabarinus
Pathway
scir03420
Nucleotide excision repair
scir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
STRCI_005368
03430 Mismatch repair
STRCI_005368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scir03400
]
STRCI_005368
Enzymes [BR:
scir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STRCI_005368
DNA repair and recombination proteins [BR:
scir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STRCI_005368
MMR (mismatch excision repair)
Other MMR factors
STRCI_005368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
AAA_30
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
WAZ23989
LinkDB
All DBs
Position
5900950..5904375
Genome browser
AA seq
1141 aa
AA seq
DB search
MPPRITDPDQLKELLGIPFTPEQTECITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQ
VAPEQVLGLTFTNKAAGELAERVRKALIKAGVTDPDVIDPDNPPGEPVISTYHAFAGRLL
TDHGLRIGLEPTSRLLADATRYQLAARVLREAPGPYPALTRSFADLVSDLLALDAELAEH
LVRPAALRAHDAELLLTLHGVKLTNADLRKVPETLAARRELAELVGRYRSAKRERDLLDF
GDQIALSAQLAGIPEVGRVLRDEFRVVLLDEYQDTSVAQRVLLAGLFGGGTGHPVTAVGD
PCQAIYGWRGASVANLDDFPEHFARADGRSATRQALSENRRSGGRLLDLANGLAGPLRAM
HAGVEALRPAPGAERDGLVRCALLPTHSEEMAWIADSIAHLVNTGKAPGEIAVLCRTATD
FAEIQGALVARDVPVEVVGLSGLLHLPEIADLVAVCEVLQDPGANASLVRLLTGPRWRIG
PRDLALLGRRARRLVSHARVDGDDDPDRRLAEAVEGVDPAEVISLADALDTFLETPFDGP
GDDDGLPFSPDARVRFARLATELRDLRRSLSDPLMDVLHRVLAVTGLEVELSASPHALAA
RRRETLSNFLDIAASFAAGDGEASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHK
SKGLEWDVVAVPGLVTGTFPSGQGREKWTSQGKVLPHALRGDADTLPDVAAWDSRGLKAF
HEAMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSDFLQALYDHCAAGYG
EIEAWADEPAEDEENPALHATDADQVWPLPLDDAALARRRAAAETVLTYLENLGSPADAD
PAATHDPEWPPPPDDEGVYGIPEEEPLEEGPVEDDPFDDGPFDDEPLDDDWDSWTAERPT
VPHQAQAPDRASLTPEEARTIASWDRDLDALTGELLRARDSVTEVPLPASLTASQVLRLA
ADPDGLAQELARPMPRPPQPAARRGTRFHAWVEARFEPLTLPMLEPDELPGSEAEIADEQ
DLEVLKEAFERTEYAHRTPYRVEAPFQLALAGRVVRGRIDAVYKEGDGERATYEIVDWKT
HRTRSADPLQLAVYRVAWAEQQGVPLESVSAAFLYVRGGEIVRPEDLPDRAALERLLTGE
P
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
gtgccgccacgtatcaccgatcccgatcagctcaaggagctcctcggcatcccgttcacc
ccggagcagacggagtgcatcaccgcgccgcccgccccgcaggtgatcgtggccggagcc
gggtcgggcaagaccacggtgatggccgcgcgcgtggtgtggctggtcggcaccgggcag
gtcgcccccgaacaggtcctcggcctgaccttcaccaacaaggccgccggtgaactcgcc
gagcgcgtccgcaaggcactgatcaaggcgggcgttaccgacccggacgtcatcgacccc
gacaacccgccaggcgagccggtgatctccacctaccacgccttcgcgggccgtctgctg
accgaccacggcctgcgcatcggcctcgaaccgacctcccgcctgctcgccgacgccacg
cgctaccagctcgccgcgcgcgtgctgcgcgaggctccgggcccctacccggcgctcacc
cgttccttcgccgacctggtcagcgacctgctcgccctcgatgccgaactcgccgagcac
ctcgtacgccccgcggcgctgcgcgcccacgacgccgagctgctgctcaccctgcacggc
gtcaagctcaccaacgccgatctgcgcaaggtccccgagaccctcgccgcgcgccgcgaa
ctggccgagctggtgggccgttaccggtccgccaagcgcgaacgcgatctgctcgacttc
ggcgaccagatcgccctgtccgcacagctcgccggaatccccgaggtgggccgcgtcctg
cgcgacgagttccgcgtggtcctcctcgacgagtaccaggacacctccgtcgcccagcgc
gtcctgctggcgggcctgttcggcggcggcaccggacatccggtcaccgccgtgggcgac
ccctgccaggccatctacggctggcgcggcgcctccgtcgccaacctggacgacttcccc
gaacacttcgcccgcgcggacggccgttccgccacccgccaggccctcagtgagaaccgg
cgcagcggcggccgcctcctcgacctcgccaacggcctcgccgggccgctgcgcgccatg
cacgcgggcgtggaggccctccgcccggcccccggcgccgaacgcgacggcctggtgcgc
tgcgccctgctgcccacccactccgaggagatggcctggatcgccgactccatcgcccac
ctggtgaacaccggcaaggcccccggagagatcgccgtcctgtgccgtacggccaccgac
ttcgccgagatccagggcgcgctggtggcccgggacgtccccgtcgaggtggtcggcctg
tccgggctgctgcatctgcccgagatcgccgacctggtcgccgtctgcgaggtcctccag
gaccccggcgccaacgcctccctggtccggctgctgaccggcccgcgctggcgcatcggc
ccgcgcgacctcgccctcctggggcgccgggcccgccgtctggtgtcccacgcgcgcgtg
gacggcgacgacgacccggaccgccggctcgccgaggccgtcgagggggtcgaccccgcg
gaggtgatatcgctcgcggacgccctggacacgttcctggagacgcccttcgacgggccg
ggggacgacgacgggctgccgttctcgccggacgcgcgcgtgcgcttcgcccgcctggcc
accgaactgcgcgacctgcgccgctcgctgtccgacccgctgatggacgtcctgcaccgc
gtcctcgccgtcaccggcctggaggtcgagctgtcggcgtccccgcacgccctggccgcc
cgccgccgcgagaccctgtcgaacttcctggacatcgccgcctccttcgccgccggtgac
ggcgaggcgagcctgctggccttcctcggcttcctgcgcaccgccgcccagtacgagaag
ggcctcgacaacgccctcccgggcggcgagaacaccgtcaaggtgctcaccgcgcacaag
tccaagggcctcgaatgggacgtcgtcgccgtccccggcctggtcaccgggaccttcccg
agcggccagggccgcgagaagtggacctcccagggcaaggtgctgccgcacgccctgcgc
ggcgacgccgacaccctgcccgacgtcgcggcctgggactcgcgcggcctgaaggccttc
cacgaggccatgaaggagcaccagcacaccgaggaactgcgcctcggctacgtcaccttc
acccgcccccgctccctgctcctcggctccggccactggtggggccccagccagaagaag
ccccgcggcccctccgacttcctccaggccctgtacgaccactgcgccgccgggtacggc
gagatcgaggcctgggcggacgagcccgccgaggacgaggagaacccggcgctccacgcc
accgacgccgaccaggtctggccgctccctctggacgacgcggcactggcccggcgcagg
gcggccgccgagacggtcctgacgtacctggagaatctcggctcccccgcggacgccgac
ccggcggccacgcacgacccggagtggccaccgcccccggacgacgagggcgtctacggc
atccctgaagaggaacctctcgaagaaggccccgtcgaggacgaccctttcgacgacggc
ccctttgacgacgagcccctcgacgacgactgggactcctggaccgcggaacgccccacc
gtcccgcaccaggcgcaggcccccgaccgcgcgagtctcacgccggaggaggcccgcacc
atcgcctcctgggaccgcgacctcgacgccctcaccggcgagctgctccgcgcgcgggac
agcgtcaccgaggtacccctgcccgcctccctgaccgcttcccaggtgctgcgcctggcc
gccgaccccgacggcctggcccaggagctggcccgccccatgccccgcccgccgcagccc
gcggcccgacgcggcacccgtttccacgcctgggtcgaggcccggttcgagccactgacc
ctgcccatgctggaaccggacgaactgcccggcagcgaggccgagatcgccgacgaacag
gacctggaggtgctcaaggaggccttcgagcgcaccgagtacgcccaccgcacgccctac
cgcgtcgaggccccgttccagctcgccctcgcgggccgcgtcgtccgcggccgcatcgat
gccgtctacaaagagggcgacggcgagcgggcgacgtacgagatcgtcgactggaagacc
caccgcacccgcagcgccgacccgctccagctggccgtctaccgggtcgcctgggccgag
cagcagggggtgccgctggagtccgtcagcgccgcgttcctgtacgtgcgcggcggcgag
atcgtccgtccggaggacctcccggaccgcgcggcactggaacggctgctgaccggggaa
ccgtag
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