Streptomyces citrinus: V2W30_03500
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Entry
V2W30_03500 CDS
T11106
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
scit Streptomyces citrinus
Pathway
scit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V2W30_03500 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scit03021
]
V2W30_03500 (rho)
03019 Messenger RNA biogenesis [BR:
scit03019
]
V2W30_03500 (rho)
Transcription machinery [BR:
scit03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
V2W30_03500 (rho)
Messenger RNA biogenesis [BR:
scit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V2W30_03500 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
ATPase_2
AAA_22
DUF3086
FtsK_SpoIIIE
AAA
NACHT
Motif
Other DBs
NCBI-ProteinID:
WWQ62522
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All DBs
Position
715255..716412
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AA seq
385 aa
AA seq
DB search
MTTTLEAPVRAPQKPDTTTKAPVPAAGVLDIGANGQGFLRAADLTPTSHDVQVPASLIRQ
LGLRKGDLVTGLCGRPHTLAQVETVGGAPAAAIRHRPRFADLTPLHPTERLRLEGSSGLA
GRVVDLVAPVGKGQRGLIVAPPKTGKTVLLQQIAASVATHHPDTHLMVVLLDERPEEVTD
MRRSVRGEVYASTFDRPAKAHIALAELAVERAKRLVEQGRDVVILLDSLTRLCRAHNNAA
ASGGRALSGGVDAAAVLGPKRLFGAARNTEESGSLTILATALVDTGSRADDYFFEELKGT
GNMELRLDRVLSDRRVYPAVDITPSGTRREELLVPADELAAVRGLRRALQGRDGHASYEA
LLDKMRHTPDNAAFLRQVHRTVPGA
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacactcgaagccccggtacgggctccgcagaagcccgacaccacgaccaag
gcccccgtcccggccgccggcgtcctcgacatcggcgcgaacgggcaggggttcctgcgg
gcggccgacctgacgcccacgtcccacgacgtgcaggtgcccgcctccctcatccgtcaa
ctcggcctgcgcaagggcgatctcgtgaccggactgtgcggcaggccgcacacgctcgcg
caggtcgagaccgtcggcggcgcacccgccgccgcgatccgtcaccgcccgcgcttcgcc
gacctcactccgctgcaccccaccgagcgactgcgtctcgaagggtcctccgggctcgcg
ggccgcgtcgtcgacctggtcgcccccgtcggcaaggggcagcgcggcctgatcgtcgcg
ccgcccaagaccggcaagaccgtgctgctccagcagatcgcggcctcggtcgccacccac
cacccggacacccacctcatggtggtgctcctcgacgagcgccccgaggaggtcaccgac
atgcgccgctccgtgcgcggcgaggtgtacgcctccacgttcgaccgcccggccaaggcg
cacatcgccctcgccgaactcgccgtggagcgcgccaagcgcctcgtcgagcagggccgc
gacgtggtgatcctgctcgattcactgacccgcctgtgccgcgcccacaacaacgcggcg
gcctccggcggccgcgccctgtccggcggtgtggacgccgccgcggtgctcggcccgaag
cggctgttcggcgcggcccgcaacaccgaggagtcgggctccctgaccatcctcgcgacg
gctctggtcgacaccggctcgcgcgccgacgactacttcttcgaggagctcaagggcacc
ggcaacatggagctgcgcctggaccgcgtcctctccgaccgccgcgtctacccggccgtc
gacatcaccccctccggcacgcgccgcgaggaactcctcgtgcccgccgacgagttggcc
gccgtacgcggactgcgccgggccctccaggggcgcgacgggcacgcgtcgtacgaagcg
ctgctcgacaagatgcggcacaccccggacaacgccgcgttcctgcgtcaggtccaccgg
acggtccccggcgcctga
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