Streptomyces citrinus: V2W30_16410
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Entry
V2W30_16410 CDS
T11106
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
scit Streptomyces citrinus
Pathway
scit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V2W30_16410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scit03021
]
V2W30_16410
03400 DNA repair and recombination proteins [BR:
scit03400
]
V2W30_16410
Enzymes [BR:
scit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V2W30_16410
Transcription machinery [BR:
scit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V2W30_16410
DNA repair and recombination proteins [BR:
scit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V2W30_16410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
WWQ64770
LinkDB
All DBs
Position
complement(3535492..3539391)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHVQVERQQVENRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLETFDLEEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLSTDGELRDTKGE
GRAFGSVAEAIMAFDAGELALQSPVDIRFPVGTIPPRGWTPPVAEEGEPEYQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFFWAT
RSGVTVAISDVVVPEAKKEIVAGYEAQDEKVQKQYERGLITKEERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLRLKIAVRG
EDGVLRKTDDVETSVYARMLAEDIVVDGKVIAPANVDLGDVLIDALVANGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISESAGRVRIEETEKTKKLVVTPDDGSDEIPFPISKRARL
LVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctccggatcggtctggccaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggtaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacgcgcgccaaggtgcgtcgtgagcggatgggccacattgagctggccgctccc
gtcacccacatctggtacttcaagggcgttccgtcgcgtctgggctacctgctcgacctc
gccccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcacgtacgtcgac
gaagagcgtcgtacccgtgacctgccctccctcgaggcgcacgtccaggtcgagcgtcag
caggtcgagaaccgtcgtgactcggacctcgaggcccgcgccaagaagctcgagaccgac
ctggccgagctcgaggccgagggtgccaaggccgacgtgcgccgcaaggtgcgcgagggt
gccgagcgcgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgtctggac
gaggtctggtcgcgcttcaagaacctcaaggtccaggacctggagggcgacgagctcctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctcgatgggtgccgcggcg
cttcagaagcgtctcgagaccttcgacctcgaggaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctcgactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcgccttctcgacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtggacgcc
ctcttcgacaacggtcgtcgtggtcgcccggtgaccggtcccggtaaccgcccgctgaag
tccctgagcgacatgctcaagggcaagcagggtcgtttccgtcagaaccttctcggtaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgcccaaggccatggcccttgagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcgcggccgc
acggtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggttctgctgaaccgt
gctcccaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagcccgccgacggccgtccggtgacgatgccgacccaggac
atggtcctcggtctgttcttcctctccaccgacggtgagctccgtgacaccaagggcgag
ggccgcgcgttcggctccgtcgccgaggcgatcatggcgttcgacgccggcgagctggcg
ctccagtcgccggtcgacatccgcttcccggtgggcaccatcccgccgcgtggctggacg
ccgccggtcgccgaggagggcgagcccgagtaccagcagggcgacagcttccggctgcgt
acgaccctgggccgcgcgctcttcaacgagctgctgcctgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggcgggcttcttctgggcgacc
cgttccggtgtcaccgtggccatctccgacgtcgtcgttcccgaggcgaagaaggagatc
gtcgccgggtacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggtctcatc
acgaaggaagagcgcactcaggagctcatcgcgatctggaccaaggcgaccaacgaggtt
gccgaggcgatgaacgcgaacttcccgaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcgtcagatcgccggtatgcgtggtctggtgtcg
aacgccaagaacgagacgatcccgcgtccgatcaaggcctcgttccgcgagggtctgtcg
gtgctcgagtacttcatctcgacccacggtgctcgtaagggtctggcggacaccgccctg
cgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtcatc
atccgcgaggaggactgcggcaccgaccgtggtctgcgtctgaagatcgccgttcgcggc
gaggacggcgtcctgcgcaagacggacgacgtcgagaccagcgtgtacgcccgtatgctc
gccgaggacatcgtcgtcgacggcaaggtcatcgcgccggccaacgtcgacctgggtgac
gtcctcatcgacgccctggtcgccaacggcgtcgaggaggtcaagacccgctcggtcctg
acctgtgagtccgcggtcggcacctgtgccttctgctacggccgttcgctcgccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccccgtgtcgtcgagctcttcgaggctcgtacgccgaagggtgtcgccccg
atctcggagtccgcgggccgggtccggatcgaggagaccgagaagaccaagaagctcgtg
gtcacgccggacgacggcagcgacgagattcccttcccgatctccaagcgtgcccgtctg
ctcgtcggcgagggcgaccacgtcgaggtgggccagaagctcaccgtgggtgccaccaac
ccgcacgacgtgctgcgcatcctcggtcagcgtgcggtccaggtccacctggtcggcgaa
gtccagaaggtctacaactcgcagggcgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctcgtcgagcgctcgaagttcgagaccgagaaccgtcgtgtggtcaccgagggc
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggcgacg
gagtcctggctgtcggccgcctccttccaggagacgacccgagtcctgacggatgcggcg
atcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctgtcccgctaccgcaacatccgggtggagcccaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
accggctccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtaa
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integrated database retrieval system
