Spiroplasma cantharicola: SCANT_v1c00460
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Entry
SCANT_v1c00460 CDS
T04084
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
scj
Spiroplasma cantharicola
Pathway
scj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCANT_v1c00460 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scj03021
]
SCANT_v1c00460 (rpoB)
03400 DNA repair and recombination proteins [BR:
scj03400
]
SCANT_v1c00460 (rpoB)
Enzymes [BR:
scj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCANT_v1c00460 (rpoB)
Transcription machinery [BR:
scj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCANT_v1c00460 (rpoB)
DNA repair and recombination proteins [BR:
scj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCANT_v1c00460 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ALD65956
UniProt:
A0A0M5KC73
LinkDB
All DBs
Position
41897..45712
Genome browser
AA seq
1271 aa
AA seq
DB search
MNYKIKKINALVERRDYAKVSGDLELPNLIELQTDTFDWFKNKGINEVFEEVFPVVSADG
DIVLSMTDWEFREPRLSITKAKEESKIFEAPIYSNLSLTIHMEDVEVFKEEISGSMETFL
KGWLQEKLESTGVEFKDSKGSLYFFEFKSKVGEKDAIQIEIKEDKEEFYLANIDIYKTGE
VFFGEFPIMTDRGTFIINGSEKVVVSQLVRSPGSYFKEEMNRKNGEMIYFADIIPSRGTW
LEFELDSKKALDNKVLNVFYVKIDKSRKTTATSLLTAFKMQKEQILDLFDNNEVISSSYE
LDTLTGDIEIDYENQVQEIYKKIRQGETATADGASKYLYGLLFDKRKYDLTKAGRFKLQQ
KLSVKNRLIGRVLAEDIIDVKGKVAFEKGTEITKDILDDLDKVLEAGAMVQKINFNEQIT
SGNEIQKVKVYKDNDLRDETATIIGITKKSKDEFINLPDIVATISYAINLMDGIGEIDDI
DHLGNRRVRTVGELLQNQFRIGMMRIEKNVREKLATSNPFKMKPSSIINNKPLTAIIGEF
FNLSQLSQFMDQTNPLAELTNKRRLTALGPGGLSRDRAALEVRDVHPSHYGRICPIETPE
GPNIGLINNLSTYAKINEYGFIETPYRKVKNTKVMSGEYEYLTADKEKDYVVAQANINLG
EDGTILDDQVIARYRGDDIMVSPKDVDYVDVSPKQIVSIATSCIPFLENDDANRALMGAN
MQRQAVPLINPESPIVGTGVEHEAARDSGDAVVATAPGIVKYVDSKKVVIEQKDGIKTYD
LNDFSRSNNGTALTHLPIVKIGDKVKARDILADGPSMEKGELALGQNVVVAFTTWNGYNY
EDAVIVSERIVIEDRFTSIHIDEYTIERRQTKQGPEEITRDIPNISEASKKYLDEDGIVA
IGAEVKVGDILVGKVTPKSQTQLSPEDKLLHAIFGEKSRNVKDNSLRVPNGGEGIIKSIK
RFSRVDGHDLPADILEIIKVYVVQKRKIQEGDKMAGRHGNKGVISKILPVEDMPHMEDGT
PVDIMLNPQGVPSRMNIGQVLEIHLGMAAKKLGIKVNTPVFEGVKEQELQDIMEEAGMDN
YGKVTLIDGQTGEAFDKPISVGVMYMLKLSHMVDDKLHTRNIGPYSLITQQPLGGKAQNG
GQRFGEMEVWALEAYGAAYTLREILTIKSDDIKGRIKTYESIVRSKPIPKPGIPESFNVL
TKEIMGLGFDMHMIDQDGKKVQINAYDDDDDFEIDDELLLADSSFNEGDIAGFSETSEDD
VITFDDESIEE
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgaattacaaaatcaagaaaattaatgcattagtggaaaggcgtgactatgctaaggtt
tcaggtgatttagaattaccaaatcttattgagttacaaacagacacatttgattgattt
aaaaataagggaataaatgaagtatttgaagaagtttttccagtagtttcagctgatgga
gatatagtattatcaatgactgattgagagtttagagaaccaagactttcaattacaaaa
gcaaaagaagagtcaaaaatatttgaagcaccaatttattcaaatttatctttaactatt
catatggaagatgttgaggtttttaaagaagaaatttcaggttctatggaaacattctta
aaaggatgattacaagagaaattggaatcaactggagttgaatttaaagacagtaaagga
tcactttacttttttgagttcaaaagcaaggttggcgaaaaagatgcaattcaaattgaa
attaaagaagacaaagaagaattttatttagcaaatattgatatttataaaacaggagaa
gttttctttggtgaattccctataatgacagatagagggacatttattattaatggtagt
gaaaaagtagttgtttcacaattagttcgttcacctggaagttatttcaaagaagaaatg
aaccgtaaaaatggggaaatgatttattttgcagatataattccatcaagaggaacatga
ttagaatttgaattagattctaaaaaagctttagataataaagtattaaatgttttttat
gtaaaaatagataaatctagaaaaacaacagcaacaagtttattgactgcattcaaaatg
caaaaagaacaaattttagatttgtttgataataatgaagtaatttcatcaagttatgaa
ttggatactttaactggtgatattgaaatagattatgaaaaccaagttcaagaaatttat
aaaaaaattcgtcaaggtgaaacagcaacagctgatggagcaagtaaatacttatatggt
ttactatttgacaaaagaaaatatgatttaacaaaagcaggaagatttaaattacaacaa
aaattatctgtaaaaaacagattaattggacgtgttttagctgaagatattatcgatgtt
aaaggtaaagttgcttttgaaaaaggaacagaaattacaaaagatattttagatgactta
gataaagtattagaagctggtgcaatggttcaaaaaattaactttaatgaacaaataaca
tcaggtaatgaaatccaaaaagtaaaagtttataaagataatgatttaagagatgaaaca
gcaacaattattgggattacaaaaaaatcaaaagatgaatttattaatttaccagatatt
gttgcaacaatttcttatgcaataaatttaatggatggtattggtgaaatagatgatatt
gatcatttaggaaacagacgagttagaacagttggagaattattacaaaaccaatttaga
attggtatgatgcgtattgaaaaaaatgtaagagaaaaacttgcaacttcaaatccgttc
aaaatgaaaccatcaagtattattaacaataaaccattaactgcaataattggtgagttt
tttaacctttcacaattatcacaatttatggatcaaactaacccattagctgaattaaca
aataaacgtagattaacagcattagggccaggtggtttaagtagagatagagctgcttta
gaagttcgtgacgttcacccttctcattatgggagaatatgtccaattgaaactcctgaa
ggaccaaacattgggttgattaacaatttatcaacttatgcaaaaattaacgaatatggg
ttcattgagactccatatagaaaagttaaaaatactaaagttatgtcaggagaatatgaa
tatttaactgcagataaagaaaaagattatgttgttgctcaggcaaatattaatttaggt
gaagatggaacaattttagatgaccaagtaattgctcgttatagaggagatgacataatg
gttagtcctaaggatgttgactatgttgacgtttctccaaaacaaattgtttcaatcgct
acatcatgtattccatttttagagaatgacgatgctaaccgtgcacttatgggagcaaac
atgcaacgtcaagctgtaccattaattaatccagaatctccaattgtaggaactggtgtt
gaacacgaagcagcacgtgactcaggagatgctgttgttgcaacagctccaggtattgtt
aaatatgtggactctaaaaaagttgttattgaacaaaaagatggaattaaaacatatgat
ttaaatgactttagtcgttcaaataatggaacagctttaactcatttaccaattgtaaaa
attggagataaagttaaggcaagagatattttagctgatggaccttcaatggaaaaaggt
gaattagctttaggacaaaatgttgttgtagcatttactacttgaaatggttataactat
gaggatgctgttattgtttcagaaagaattgttattgaagatagatttacttcaattcat
attgatgaatatacaattgaaagaagacaaacaaaacaaggtccagaagaaataacaaga
gatattccaaatatttctgaagcaagcaaaaaatacttagatgaagatggtattgttgca
attggagcagaagttaaagttggtgatattttagtgggtaaagttactccaaaatcacaa
actcaattatcaccagaagataaattactacatgctatctttggagaaaaatcaagaaat
gttaaagataattctttaagagtacctaatggtggagaaggaataattaagtcaattaaa
cgtttctcaagagttgatggtcatgacttaccagcagatattttagaaatcattaaagtt
tatgttgttcaaaaacgtaaaattcaagagggagataaaatggcaggacgccatggtaac
aaaggtgttatttcaaaaatcttacctgttgaagatatgccacatatggaagatggaaca
ccagttgacattatgttaaatccacaaggggttccttcacgtatgaatattggacaagta
ctggaaatccatctaggaatggctgcaaaaaaacttggaattaaagttaatactcctgtt
tttgaaggggttaaagaacaagaattacaagatattatggaagaagctggaatggataat
tatgggaaagttacattaattgatgggcaaacaggtgaagcatttgataaacctatttct
gttggtgtaatgtatatgttaaaactatctcacatggttgacgataaattacatacaaga
aatattggaccgtactcattaattactcaacaaccattaggaggaaaagctcaaaatggt
ggtcaaagatttggagaaatggaagtttgagcgcttgaagcatatggtgctgcttataca
ttacgtgaaatcttaactattaaatctgatgatattaaaggtcgtattaaaacatatgaa
tcaattgttagatctaaaccaattcctaaaccaggaattcctgaatcatttaatgttctt
acaaaagaaattatgggattaggatttgatatgcacatgattgaccaagatggtaaaaaa
gtgcaaatcaatgcttatgatgacgatgatgattttgaaatcgatgatgaattattatta
gcagactcatcatttaatgaaggtgacattgcaggatttagtgaaactagtgaagatgat
gttattacttttgatgatgaaagtatagaagaataa
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integrated database retrieval system
