Spiroplasma cantharicola: SCANT_v1c00770
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Entry
SCANT_v1c00770 CDS
T04084
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
scj
Spiroplasma cantharicola
Pathway
scj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCANT_v1c00770 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scj03019
]
SCANT_v1c00770 (rnr)
03016 Transfer RNA biogenesis [BR:
scj03016
]
SCANT_v1c00770 (rnr)
Enzymes [BR:
scj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SCANT_v1c00770 (rnr)
Messenger RNA biogenesis [BR:
scj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCANT_v1c00770 (rnr)
Transfer RNA biogenesis [BR:
scj03016
]
Prokaryotic type
tRNA degradation factors
SCANT_v1c00770 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
S1CSD-TOTE-2
OB_RNR_1st
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ALD65987
UniProt:
A0A0M4K0K4
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All DBs
Position
79277..81373
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AA seq
698 aa
AA seq
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MKNIILERLKKKEKMHLNDLINNMNEKYESVTDALRILQEDHLIGWSKENVIYFVGEKYK
IGSIKINDKGFGFIKELNSEDDDFFVPPNGLNGSISSDEVIFTVQKENDDRFKANVEDVI
LRTKTSLIGEIRKSNCGRFMDFIPNEPGFKNYRIVLVNSKDYKLKEDLIIKVKILDVRDR
KLFTRIQKIIGDANKAIDRIISIAYEFEIKPEFNKLTLDNAIEVAKPIDYKDEKIKRRLS
NSLINKNLVTIDGADSKDLDDAIYVEKTNNGYKLIVAIADVSYYVTPFSPLDNTALFRGN
SVYLANKVIPMLPEKLSNGVCSLNPNEEKLCMVAEMDFDLKGNVISKKVYESIMISKARL
TYKEVNELYNNNKVEIKKEIIDMLMTAKELHEIIDLERSNRGAIEFDIAEPKIILDKDSN
VIEIAKRGRGISEKLIENFMVSANECVASIIFEKKLPFIYRNHDVPKEENLIEWHSILRA
LGVNVKLTDLDKINPKMIKQALSQIESQITDSTERDVINVTLLKFMEKAAYELENIGHFG
LASACYTHFTSPIRRYSDLIVHRFLKQYLISKDLREQKLEQNKNFVLKACAIINDTEKQA
VSAEREVNKVCMAEYMQSKIGQEYEGIVAAVLKFGIFVQLENCVEGLIHISELPDFTFEE
KTNIMVNKQNKIFRLGQKIKIKVKNADVKKRIIDFVLV
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatataatattagagcggttaaagaaaaaagaaaaaatgcacttaaatgattta
attaataatatgaatgaaaagtatgaaagcgttactgatgctttaagaatacttcaagaa
gatcatttaataggatgaagtaaagaaaatgttatttattttgtgggtgaaaaatataaa
attgggtcaataaaaataaatgacaaaggttttggttttataaaagaactgaacagtgag
gatgatgatttttttgttcctccaaatggacttaatggttctatatcttctgatgaggta
atttttactgttcaaaaggaaaatgatgatagatttaaagcaaatgttgaagatgttatt
ttaagaacaaaaacatctttaattggtgaaataagaaaaagtaattgtggtagatttatg
gactttataccaaatgaaccaggatttaaaaattatagaattgtattggttaattcaaaa
gattataaattaaaagaagatttaattataaaagtcaaaatattagatgtaagagataga
aaactttttacaagaattcaaaaaataattggtgatgcaaataaagcaatagatagaatt
atttcaattgcttatgaatttgaaataaaaccagaatttaataagctgacattagataat
gcaattgaagttgctaaaccaattgattataaagatgaaaaaattaaaagaagactttca
aattctttaataaataaaaatttagtgacaattgatggagcggattcaaaagatctagat
gatgcaatttatgttgaaaaaacaaataatggatataaacttattgttgcaattgctgat
gtaagttattatgtaactccattctcacctttggataatacagctttatttagaggaaac
tctgtttatttagcaaataaagtaataccaatgttacctgaaaaattatctaatggagtt
tgtagtttaaatccaaatgaagaaaaattatgtatggttgcagaaatggattttgattta
aaaggaaatgtaataagcaaaaaagtatatgaatcaattatgatttcaaaagcacgtcta
acttataaagaagttaatgagctatacaataataataaagtggaaattaaaaaagaaatt
attgatatgttaatgactgcaaaagagcttcatgaaattattgatttagaaagatcaaat
agaggagcaattgaatttgatattgcagaaccaaaaataatattagataaagattcaaat
gtcattgaaattgcaaaacgtggaagaggtattagtgaaaaacttattgaaaattttatg
gtaagtgcaaatgagtgtgtggcaagtatcatctttgaaaaaaaattaccttttatttat
agaaatcatgatgttccaaaagaagaaaatcttattgaatgacattcaattttgagagct
ttaggagtaaatgttaaattaactgatttagataaaattaatccaaaaatgattaagcaa
gctttaagtcaaattgaaagtcagataacggattcaactgaaagagatgttattaatgta
actctattaaaatttatggaaaaagctgcttatgaattggaaaatataggacactttgga
ttagcaagtgcttgttatacacatttcacaagtccaattagaagatatagtgatttgatt
gttcatagatttttaaaacaatatttaatttcaaaagatttaagagaacagaaattagaa
caaaataaaaattttgttctaaaagcttgtgctattattaatgatacagaaaaacaagct
gtttctgccgaaagagaagttaataaagtttgtatggctgagtatatgcaatctaaaatt
ggtcaagagtatgaaggaattgttgctgcagtattaaagtttgggatttttgtacaacta
gaaaattgtgttgaaggtttaattcatatttcagagttacctgattttacttttgaagaa
aagacaaatattatggtaaataaacaaaataaaatatttagattaggtcagaaaataaaa
attaaagtaaaaaatgcagatgttaaaaaaagaattatagactttgtgcttgtttaa
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