Spiroplasma cantharicola: SCANT_v1c02240
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Entry
SCANT_v1c02240 CDS
T04084
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scj
Spiroplasma cantharicola
Pathway
scj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCANT_v1c02240 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scj03019
]
SCANT_v1c02240 (rnj)
Messenger RNA biogenesis [BR:
scj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCANT_v1c02240 (rnj)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
DUF7088
RMMBL
Motif
Other DBs
NCBI-ProteinID:
ALD66134
UniProt:
A0A0M3SJ52
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Position
265235..266950
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AA seq
571 aa
AA seq
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MADIKFMALGGQDERGKNIFVISVNDNLYIFDAGIKFPERSVLGIDVIIPNFDFLKANAK
KIKGIFLSNPSSNNSGAISYILREIDVPVYCNELTTTILKYRNLKYRIKNRENNFKIIND
KDVINFGDVKVEAFRTTAAFPESYGFAIHTQDGVIVYAGDYIIDGNEQSYFSTDMNHLNQ
IAQKGVLALISDAEYASRIGYTVPNHRIEKFIAAPIKDKKRRLILGMFEEDVFKLFEIIK
QAKANDRKIAIYGKTITKVVESKVIQESLNITEKDIISIEEFMKSQDGILLLTGAGDLLY
ARLAKIAAGNDDKVEFTENDTIILATPPAAGVEKRHAEILDELSRTNAKLISLTEKNIWS
MRASYEDIKLMTRIMKPKSFIPIKGLYKDFLSAERAAIEAGVDKKNIQLINNGQILKIND
GGKLVIGADSIKTADVYVDGIGVGDIGAVVLNERKQLATDGAVIIGANINNKTKELISLI
DIQMRGVIYITDENPIFKLMQKQIIDILEKYKNEAKSKPASFDLNAIKKEIVSRIRSTLK
QETGKQPIVLVIINELDGSFFEPKMVKSKNS
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggcagatattaaatttatggcccttggtgggcaagacgaaagaggtaaaaatattttt
gttattagtgttaatgataacttatatatttttgatgcaggaattaaatttccagaaaga
agtgtattaggaattgatgtaataatcccaaattttgattttttgaaggcgaatgccaaa
aaaatcaaaggaattttcctttcaaatccaagctcaaataattccggagcaattagttat
attttaagagaaattgatgtacctgtttattgtaatgaacttacaacaactattttaaaa
tatagaaacttaaaatatagaataaaaaatagagaaaataacttcaaaataattaatgat
aaagacgtcattaattttggagatgtaaaagtagaggcatttagaacaacagctgcattt
ccagaatcttatggttttgcaattcatactcaagatggtgttattgtttatgctggagat
tatattattgatggaaatgaacaatcatatttttcaacagatatgaatcatctaaaccaa
attgctcaaaaaggagtattggctttaattagtgatgctgaatatgcttcaagaataggt
tacactgttccaaatcataggattgaaaaatttattgcagcaccaataaaagataaaaag
agacgtttgattttaggaatgtttgaagaggatgtttttaagttatttgaaataataaaa
caagcaaaagcaaatgatagaaaaatagcaatttatggaaaaactattactaaggttgtt
gaatctaaagtaatacaagaaagtttaaatattactgaaaaagatattatctctattgaa
gaatttatgaaatcacaagatggaattttattgttaactggagcaggagatctgttatat
gcaagacttgcaaaaattgctgcgggaaatgatgataaagttgaatttactgaaaatgat
actattattttagcaactcctccagcagctggagttgaaaaaagacacgctgaaattctt
gatgaattatcaagaacaaatgccaagttaatttctttaactgaaaaaaatatttgatct
atgagagctagttatgaagatataaaattgatgactagaattatgaaacctaaatcattc
ataccaattaaaggattgtataaagattttttaagtgctgaaagagctgcaatagaagct
ggcgtggacaagaaaaatattcaactaattaataatggtcaaattcttaaaattaatgat
gggggaaaattagttattggtgctgactcaattaaaacagcagatgtttatgttgatgga
attggagttggtgatattggagcagttgttttaaatgaaagaaaacaacttgcaacagat
ggggcagttattattggagcaaatataaataataaaactaaagagttaatatctctaatt
gatattcaaatgagaggtgttatttacatcactgatgaaaatccaatttttaaattaatg
caaaaacaaataattgatattttagagaaatataaaaatgaagcaaaatcaaaaccagct
agtttcgatttaaatgcaattaaaaaagagattgtttcaagaataagaagtactttaaaa
caagaaacaggaaagcaacctattgttttagtaataattaatgaattagatggttcattt
tttgaaccaaaaatggtgaaatcaaaaaactcatag
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