Spiroplasma citri: SCITRI_001290
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Entry
SCITRI_001290 CDS
T04628
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sck
Spiroplasma citri
Pathway
sck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCITRI_001290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sck03019
]
SCITRI_001290
03009 Ribosome biogenesis [BR:
sck03009
]
SCITRI_001290
Enzymes [BR:
sck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCITRI_001290
Messenger RNA biogenesis [BR:
sck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCITRI_001290
Ribosome biogenesis [BR:
sck03009
]
Prokaryotic type
rRNA helicases
SCITRI_001290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF2007
AAA_19
Cas3-like_C_2
P-loop_SecA
AAA_11
Motif
Other DBs
NCBI-ProteinID:
APE75167
UniProt:
Q14NT1
LinkDB
All DBs
Position
complement(1083590..1084921)
Genome browser
AA seq
443 aa
AA seq
DB search
MNFNTLNLYPALQRMIAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVPIL
QNLNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALRKS
NIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTLLF
SATMPKQVLEIANNYQTNPVEIVVTKNVIEQNNISQHYVNAISYHKEDVLIALYKHLQPK
RSIIFSNTKVFTNKIAEMLTNNGIPCCIINGDKSRYERGQAMRLFRDGKVRVMVATDVAA
RGIDIDNIDYVINYDIPTERESYIHRIGRTARAGATGVAISIVSNRNDLREIQHLGAYQK
KKIELLDITTYDLKQKPQERKNFSTNHKKSAFNKKNNSFKYEDSYLDNKKNQNAKKKFNT
QGNKKWKQKKQKFDKSNFTFNRI
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaatacattaaatttatacccagcattacagcgaatgattgctaaaatgggt
tatactaacctaactgaaatccaagaaaaagctatcccagttgctcttaatagtcaagat
attattggtaaaagtcatacgggtactggtaaaaccgtagcttttattgtgccaattttg
caaaacttaaatacacacttaaaacaaccacaagcgattattttatgtccaacccatgaa
ttagcaagtcaaataattgaacaggttcgaaaatttgcaacttatttagaaggagtaaat
gcaaccttaatttgtggtggttcacatattcaacgtcaaatttatgctttacgaaaaagc
aatattattgtgggaactccggggcgaattgctgatcatattaatcgtaaaacattgcga
ttagataaaattaaaacaattgttttagatgaagctgatgaaatgttaaaaatgggattt
aaaactgaccttgataaagtatttcaaaatgctcctaataaatatcaaacattattattt
tccgcaacaatgccaaaacaagtattagaaattgctaataactatcaaactaatcccgtt
gaaattgttgttacaaaaaatgttattgaacaaaataatattagccagcattatgttaac
gcaatatcttatcataaggaagatgttttaatagcattatataaacatttgcaaccaaaa
cgaagcattatattttcaaatacaaaagtttttactaataaaattgctgaaatgttaaca
aataatggtattccttgttgcatcattaatggtgataaaagtcgttatgaacgaggacag
gcaatgcgtttatttcgtgatggtaaagtacgagttatggttgccactgatgttgcagca
cgaggaattgatattgataatattgattatgttattaattatgatattccaacagaacga
gaaagttatattcatcgaattggtagaacagcacgtgctggtgctactggtgtagcgata
tcaattgtttcaaatcgtaatgatttaagagaaattcagcatttaggtgcatatcaaaag
aaaaagattgagttattagatattacaacatatgatttaaaacaaaaacctcaagaaaga
aaaaattttagcactaatcataaaaaatcagcttttaacaaaaaaaacaatagttttaaa
tatgaggattcatatttagataataaaaagaaccaaaatgcaaaaaagaaatttaatact
caaggtaataaaaaatgaaagcaaaaaaagcaaaaatttgataaatctaattttactttt
aatagaatttaa
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