Spiroplasma citri: SCITRI_00355
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Entry
SCITRI_00355 CDS
T04628
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sck
Spiroplasma citri
Pathway
sck03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sck00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCITRI_00355 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sck03021
]
SCITRI_00355 (rpoA)
03400 DNA repair and recombination proteins [BR:
sck03400
]
SCITRI_00355 (rpoA)
Enzymes [BR:
sck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCITRI_00355 (rpoA)
Transcription machinery [BR:
sck03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCITRI_00355 (rpoA)
DNA repair and recombination proteins [BR:
sck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCITRI_00355 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_5
DUF4085
ATG14
Motif
Other DBs
NCBI-ProteinID:
APE74264
UniProt:
A0AAJ4EIH0
LinkDB
All DBs
Position
301886..302839
Genome browser
AA seq
317 aa
AA seq
DB search
MKQFIRPEFKLQAEDKANNYGKFLVEPLERGFGVTLGNAIRRTLLSATPGAAVFAVRIKG
ASHEFTAIPGVVEHVTKIILNIKNLVLKINQDIIPDGESVILKVVSSKEGEIYARDLVVP
TGVEVINGDLLLATIAKGGELDLELHARNSRGYKSFTDNKKEKKYADLIVIDSNYCPIQR
VAYNVEPTKVGKNADLEKLELEIQTDSSITPVNAVAMAAKVITEHLEFFVNLNEAIKATQ
IISSEAEAEEDELERSIDELEFTQRSQNCLKRAKIDTLRDLVSKSEDEIQEIRNLGKKSL
TEIKDKVAQLGLNFRRD
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaatttattagaccagaatttaaattacaagcagaagataaagccaataattac
ggaaaatttttagttgaaccattagaacgaggatttggtgtaacattaggaaatgcgata
cgtcgaacattactatcagcaacaccaggagccgccgtttttgctgttcgaattaaaggt
gcctcgcatgaatttactgctattcctggtgttgttgaacatgttacaaaaataatttta
aatattaaaaatttagtattaaaaattaatcaagatattattcccgatggagaatcggta
attttaaaagttgtttcttcaaaagaaggagaaatttacgcaagagatttagttgtccca
acgggagtagaagttattaatggtgatttattattagcaacaattgctaaaggtggagaa
ttagatttagagttacatgctcgtaattcacgtgggtataaatcatttacagataataaa
aaagaaaaaaaatatgctgatttaattgtcattgattcaaactattgtccaattcagcgt
gtggcatataatgttgagccaacaaaggttggaaaaaatgctgacttagaaaaattagaa
ttagaaattcaaactgatagttcaattacgccagttaatgctgttgcaatggcagcaaaa
gttattactgagcatttagaattctttgttaacttgaatgaagcaattaaagcaacccaa
attatttcatcggaagcagaggctgaagaagatgaattagagcgtagcattgatgaacta
gaatttacgcaacgttcacaaaattgtttaaaaagagcaaaaattgataccttgcgtgat
ttagtttcaaaatcagaagatgaaattcaagaaattagaaacttagggaaaaaatcatta
acagaaattaaagataaagtggcccaattaggtttaaactttcgacgtgattaa
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