Spiroplasma citri: SCITRI_00490
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Entry
SCITRI_00490 CDS
T04628
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sck
Spiroplasma citri
Brite
KEGG Orthology (KO) [BR:
sck00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SCITRI_00490 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sck03021
]
SCITRI_00490 (rpoD)
Transcription machinery [BR:
sck03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SCITRI_00490 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF7674
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
APE74395
UniProt:
Q14P59
LinkDB
All DBs
Position
432517..433854
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AA seq
445 aa
AA seq
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MGLSKKEVRDMKSFDEFKEYINKYLEENNNEIEQEKLITLINDHFEVDDNDVEEYFEELV
TNGVEFSDVNLEELEENEVPEPEKVTKKQPDEKLRYKVGGISNETKIQDIIKAYFNILGT
SKILTREEEIKYAKMLESSDPEEIRFGRDKLITSNLKLVVSVARKHLNRGLDFSDLIEEG
NIGLMKAVDKFDYKRGFKFSTYATWWIRQATTRAIADQARTIRIPVHMVETINKLTRIER
QLTQELGREPSYNEIAEKMGQGMVGEKVREIKRLSIEPVSLEKPIGDEDDTHFGDFVDDK
DIFTPDEYTEKESLREVIDEVFHEILSAREEKVIRMRFGLLPTKLRTVLRLAKECEDETF
PELVQTVKALDIHYDTPIEKVQSQKHALIDKHLSKYDSPKTLEEVGKEFKVTRERIRQIE
AKTIRKFKPNQANSKAKVLKDFFKG
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgggattatcaaaaaaagaagtcagagatatgaaatcttttgatgaatttaaagaatat
attaataaatatttagaagaaaataacaatgaaattgaacaagaaaaattaataacatta
attaatgatcattttgaagttgatgataatgatgttgaagaatattttgaagaattagtc
actaatggtgttgaatttagtgatgttaatttagaagaattagaagaaaatgaagttcct
gaaccagaaaaagtaacaaaaaaacaaccagatgaaaaattacgttataaagttggtggt
atttcaaatgaaacaaaaattcaggatattattaaagcttactttaatattttgggaaca
agtaagattttaactcgtgaggaagaaattaaatatgccaaaatgctagaatcatctgat
ccagaagaaatacgttttggaagggataaattaatcacttctaacttaaagttagttgtt
tcagttgcccgcaaacatttaaaccggggattagatttttcagacttaattgaagaagga
aacatcgggttaatgaaagctgttgataagtttgattataagcgtggttttaaattttca
acatatgcaacatgatgaattagacaagcaacaacacgggcaattgctgatcaagcgcga
acaattcggatccctgttcatatggttgaaacaattaataaattaacaagaattgaacgt
caattaacacaagaattagggcgcgaaccaagttacaatgaaattgccgaaaaaatgggg
caaggaatggttggcgaaaaagttcgtgaaattaaaagattatcaattgaaccggtttca
ttagaaaaaccaattggtgatgaggatgatactcattttggtgattttgttgatgataaa
gatatttttacaccggatgaatatactgaaaaagaatcattacgagaagtaattgatgaa
gttttccatgaaattttatcagcccgagaagaaaaagtaattagaatgcggtttggactt
ttaccaacaaagttacgaacagtattacggttagcaaaagaatgcgaagatgaaactttt
cctgaattagtccaaacagttaaagcacttgatattcactatgatacaccaattgaaaaa
gtacaaagtcaaaaacatgcgttaattgataaacatttatcaaaatatgattcgccaaaa
acattagaagaagtaggcaaagagtttaaagttacacgagaacgaattcgtcaaattgaa
gcaaaaacaattcgtaagtttaaaccaaaccaagctaactcaaaagcaaaagtattaaaa
gacttttttaaaggatag
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