Spiroplasma citri: SCITRI_00496
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Entry
SCITRI_00496 CDS
T04628
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
sck
Spiroplasma citri
Brite
KEGG Orthology (KO) [BR:
sck00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sck03019
]
SCITRI_00496
03009 Ribosome biogenesis [BR:
sck03009
]
SCITRI_00496
Enzymes [BR:
sck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCITRI_00496
Messenger RNA biogenesis [BR:
sck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCITRI_00496
Ribosome biogenesis [BR:
sck03009
]
Prokaryotic type
rRNA helicases
SCITRI_00496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
PhoH
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
APE74401
UniProt:
A0AAJ4JXV2
LinkDB
All DBs
Position
437804..439186
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AA seq
460 aa
AA seq
DB search
MSNFNQFGFKRFLNFGLAELNFVEPTIVQEKVMPLLLKHQNVICKAHTGTGKTFAFCLPI
LNNINYEQVKIQAIIVTPTRELAKQIYDNIRFFKKFEPNLQVNYFIGGEDIKRQIKQLQR
TQPHIIIATPTRLKDSFEQQSLNLGKLTTFIIDECDMLFDLGFIENVDYILSKVNSNVQV
SVFSATIPHELKPFLIKYLKNPHYLDLNANQLTNQNITHILIPTKHQERETILLKLLKTF
DPYLCLIFVNKKTDINKYYDLLLEHNYSVAQLHAGLEPRLRTKVVKRIRNLEYKYVIASD
IAARGIDFIGVSHVISIDLPNDLEYYTHRSGRTGRANYTGYSYVLYDTKNLTLVQQLISK
GITFKTKKWNQQGELVETVISIDKSKKHSSLVVDNEINKIIHRYKTKDNNKKVKPGYKKK
RKAEIDEFKKQVRRSHIKESIKRIKKEKAKERATKLFDKD
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgagtaattttaatcaatttggctttaaacggtttttaaatttcggtcttgctgaatta
aattttgttgaaccaactattgttcaagaaaaagtaatgccattattgttaaaacatcaa
aatgttatatgcaaggcgcatacaggaactggaaaaacatttgcgttttgtttgccaatt
ttaaataatataaattatgagcaagtgaaaattcaagccattattgtgaccccaacacgt
gaattagcaaaacaaatttatgataatattcgtttttttaaaaaatttgaaccaaattta
caagttaattattttattggtggcgaagatattaaacgtcaaattaaacaattacaacga
acacagccgcacattattattgccactccaactcggctaaaagattcatttgagcaacaa
agtttaaatttaggtaaattaacaacttttattattgatgaatgtgatatgctttttgat
ttaggttttattgaaaatgttgattatattttgagtaaagttaattctaatgttcaagta
tctgttttttctgcaacaattccgcatgagttaaaaccttttttaatcaaatatttaaaa
aatccacattatttagatttaaatgccaatcaattaacaaatcaaaacattacacatatt
ttaattccaacgaagcatcaagaacgagaaacaattttattaaaacttttaaaaacattt
gacccatatttatgtttaatttttgttaataaaaaaacagacattaataagtattatgat
ttgttattagaacataattattctgtagctcaattacacgcagggttagaaccacgattg
cgaacaaaagttgttaaacggattcgaaatttagaatataaatatgttattgcaagtgat
attgcagcccgtgggattgattttattggtgttagtcatgttatttcaattgatttacca
aatgatttagaatattatactcatcgtagtgggcgtactgggcgggcaaattatacaggg
tatagttatgttctttatgatacgaaaaatttaactttagttcaacaattaatttcaaag
ggaattacttttaaaacaaagaaatgaaatcaacagggagaattggttgaaacagttatt
agtattgataagtctaaaaaacattcttctcttgtggttgataatgaaattaataaaatt
attcatcgttataagacaaaagataataataaaaaagttaaacctggttataagaaaaaa
cgtaaagcagaaattgatgaatttaaaaaacaagttcggcgaagtcatattaaggaatca
attaaaagaattaaaaaagaaaaagcgaaagaacgggcaaccaaattatttgataaagat
taa
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