Sorangium cellulosum So ce56: sce0700
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Entry
sce0700 CDS
T00634
Symbol
deaD1
Name
(GenBank) ATP-independent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scl
Sorangium cellulosum So ce56
Pathway
scl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
sce0700 (deaD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scl03019
]
sce0700 (deaD1)
03009 Ribosome biogenesis [BR:
scl03009
]
sce0700 (deaD1)
Enzymes [BR:
scl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
sce0700 (deaD1)
Messenger RNA biogenesis [BR:
scl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
sce0700 (deaD1)
Ribosome biogenesis [BR:
scl03009
]
Prokaryotic type
rRNA helicases
sce0700 (deaD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
CAN90857
UniProt:
A9ENG9
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All DBs
Position
complement(997413..999287)
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AA seq
624 aa
AA seq
DB search
METTPSSASFAALGIAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTA
AFALPLLQRLEIGGEPPRLPEALVLVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFG
QQLRALRRGVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSA
TPGARQTVLFSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKS
AALTRVLDMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRA
GTAELLVATDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPRE
HYLIRNVERLTGQRIEAATLPTVADLRARRLELTRASLREALIEGGAERFRVVVEGLADE
FDVMDIAAAAVKLAHDATEGDREEEEAEIPSFRPPPRGPERARDDRAPRGPAGARGRPGE
AQARPRRETREARETDGNVARLYVSAGRNAGIRPADLVGAIANEASLSSRDIGAIEIADG
FSTVEVPADAADAVIEALRATRLKGRKVQVRRDDAGSREARGGAAEARGGAAEARGGAAE
ARGGAAEARGKAAGMAPPRRRPRT
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
gtggagacgaccccctcgtccgccagcttcgccgcgctcggcatcgcacctgccctcctc
ggcgtgctcgccgagctcggttacgaggagcccacgccgatccagcgcgaggcgatcccg
cacctgctgaccgggcgcgacctgctgggacaggccgccaccgggaccgggaagacggcc
gcgttcgcgctgccgctgctccagcgcctcgagatcggcggcgagccgccccgcctcccc
gaggcgctcgtgctcgtgccgacccgcgagctggcgatgcaggtggccgaagcgatgcac
cgctacggccgccggctcggcgtgcaggtgctgtccgtgtacggcggccagcccttcggg
cagcagctgcgcgcgctccgccgcggggtccacgtcgtcgtggccacgccgggccggacg
ctcgaccacatcgggcgcggcacgctcgcgctcgacggcatccgcaccgtcgtgctcgac
gaggccgacgagatgctcgacatgggcttcgccgaggcgctggaggagatcctctcggcc
acgccgggcgcgcggcagaccgtgctcttctccgcgaccctgcccccgcggatcgccgcg
atcgccggccggcacctgcgcgagccggtgcgggtcaagatcgcgggcgagaaggcggcc
ccgggcgagctcccccgcgtccgccagacggcgtacatcgtgccgcgggcgcacaagtcc
gcagcgctgacccgggtgctcgacatggaggacccgtcgtcggccatcctcttctgccgc
acccgcaacgaggtcgacgagctaaccgaggcgctgcgcgcccgcggctacgaggcccag
gcgctccacggcgggttctcgcaggagcaccgcgatcgcgtgatggcccgcttccgcgcc
ggcacggccgagctgctcgtcgccaccgacgtcgcggcgcgggggctcgacatcgagcat
gtctcgcacgtcatcaactacgacgtcccctgcgcccccgaggtgtacgtccaccgcatc
ggccggacggggcgcgccggccgcgagggcgcggcgatcacgctggtcgagccgcgcgag
cactacctgatccgcaacgtcgagcggctcaccgggcagcgcatcgaggccgccaccctc
ccgaccgtggccgacctgcgcgcgcggcgcctggagctgacgcgcgcctcgctgcgggag
gcgctcatcgagggcggcgccgagcggttccgggtcgttgtcgaggggctcgcggacgag
ttcgacgtgatggacatcgcggcggcggcggtgaagctcgcccacgacgcgacggagggg
gaccgggaggaggaagaggcggagatcccgtcgttccggccgcctccgcgcgggccggag
cgcgcccgcgacgaccgcgcgccgcgcggccccgcgggggcgcgcgggcgcccgggcgag
gcgcaggcgcggccgcggcgggagacgcgagaggcgcgggagaccgacggcaacgtcgcc
cggctgtacgtcagcgcggggcgcaacgcgggcatccggccggccgatctggtcggcgcc
atcgcgaacgaggcgtcgctgagctcccgcgacatcggcgccatcgagatcgccgacggc
ttctccacggtggaggtcccggccgacgcggcggacgccgtcatcgaggcgctgcgcgcc
acacggctgaagggccgcaaggtccaggtccgccgggacgacgcggggtcccgcgaggcg
cgaggcggggcggccgaggcccgcggcggggcggccgaggcccgcggcggggcggccgag
gcccgcggcggggcggccgaggcccggggcaaggcggcgggtatggcgcccccgcggcgg
cgtccacggacctag
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