Sorangium cellulosum So ce56: sce2633
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Entry
sce2633 CDS
T00634
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
scl
Sorangium cellulosum So ce56
Pathway
scl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
sce2633 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scl03400
]
sce2633 (mfd)
Enzymes [BR:
scl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
sce2633 (mfd)
DNA repair and recombination proteins [BR:
scl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
sce2633 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_30
MFD_D3
UB2H
Motif
Other DBs
NCBI-ProteinID:
CAN92792
UniProt:
A9G788
LinkDB
All DBs
Position
complement(3557513..3561328)
Genome browser
AA seq
1271 aa
AA seq
DB search
MLDRAAPMPPERSLTSTSSSPLSATIAELSGHVDDSASNDTATSGPPASTPADFEPLPSF
DLPADRRVVTPRELAAELAAAPPGTRHVTGSAGSAGALVIRRLVAAVAGRRLIALTPDVD
SARALAADTSFLLVDRDADDAEAAGSTTFGRVLLYLPNEASPYADVNPDRRGAQTRLATL
FHLGMDLPWSVLVCPITALIRKVVSRDEITEHAELVIAEQEMDRDALSARLGASGYVRSP
LVEDPGTFAVRGALLDVWAPSAELPVRIDFYGDIVASIKTFNPDDQRTVADVKEVWIPPA
REAILTPANVERARQRVRAACDVIDFPSTKARALVDDVASGRAFFGAEGYLPAFIDLASF
TSYLPDDALILLEDPSSVTAAVRNELGRAGADRSHKDREPHFPLASFYEDEAHVASWLGA
RAVLALHRTGVEGAAENRNSLERFEVVPEDVPSLATRDQSDLERAIKTARASRGKHGALD
PLVRRVVAWQEAGLRVLIAARAQTQVERLVALLRHRDVRVKANLGPFDPAFFDGSSSASP
RDTALVVTGSLARGVIAPAEGLALVTEEEIFGARAHRRAARAAASSTKPSQAFLEDLRNL
GVGDHVVHVEHGIGRYLGLVHKQVGSTTVDLIAVEYAGGDKLYLPVYRLNQIQKFSGGEG
TPKLDRLGGQTFAKTKARVEKSVRKMADELLRLYAERRAATAEPVPPPDDDYRAFEATFP
FDETPDQARAITEVTADLESGRPMDRLVCGDVGFGKTEVAIRAAFRAANAGRQVAVLCPT
TVLAQQHYLSFRSRMASYPIEVRVMSRFQSKQEQDEVSRGLRDGSVDVVIGTHRLLSKDV
HFKRLGLLVVDEEQRFGVTHKERIKALKTNVDVLTLSATPIPRTLQMAVSGLRDMSIITT
PPVDRRAIRTVVTRHDEAVLREAVLRELGRGGQVFYVYNRVEGLYERAARLAELVPSARI
CVAHGQMSEQSLEQAMLDFVEGRYDVLCATAIIESGLDIPRANTILIDRADMFGLSQLYQ
LRGRVGRSKERAYCYLIVPPPNAMTDEARARIEALERHTELGSGFQIASLDLELRGSGDL
LGAEQSGTVAQVGFELFCQMLDEAVHELRGEPVVHDVDTELSFDADALLPEEYISDVGVR
LSLYKRLAGAASTEDVQDLAVEMEDRFGPPPLEARRFVHLMRLKTELRRLKALACEASAK
GVTLHLREDTPLDHAKVLKLVQPKASPYRLSPDMRLTRRAKEGEAFTSGLEATDKLLSEL
AGCLKDGSDLA
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgctagaccgcgctgcgccgatgccccccgagcgctccctcacttccacctcgagctcc
ccgctcagcgccacgatcgccgagctctcaggccacgtcgacgacagcgcctcgaacgat
accgctaccagcggcccgcccgcctccacgccggccgacttcgagccgctcccgtcgttc
gacctcccagcagaccgccgggtcgtcacgccccgtgagctcgccgcagagctcgccgcg
gcgccgcctggcacccgtcatgtcacaggctcggccggctcggccggcgccctcgtcatc
cgccgcctcgtcgcggccgtcgctgggcgccggctcatcgccctcacccccgacgtcgac
agcgcccgcgctctggcggccgatacctcgttcctgctcgtcgatcgggatgccgatgac
gccgaggccgccggctcgaccacgttcggccgcgtccttctctacctgccgaacgaggcc
agcccttacgcggatgtcaacccggaccgccggggcgcccagacccgcctcgccacgctc
ttccacctcggcatggaccttccctggtcggtcctcgtctgccccatcaccgcgctcatc
cgcaaggtcgtatccagggacgagatcaccgaacacgccgagctcgtcatcgccgagcag
gagatggatcgcgacgcgctctcggcccgcctcggtgcatcgggctacgtccgcagcccc
ctcgtggaagaccccggcaccttcgccgtccgcggcgccctcctcgatgtctgggcgcct
tccgccgagctgccggtgcgaatcgacttttacggggacatcgtcgcatcgatcaagacc
ttcaaccccgacgaccagcgcacggtcgccgacgtgaaggaggtctggatcccgccggcg
cgcgaggcgatcctcacgcctgccaatgtcgagcgggcccgccagcgggtacgcgccgcg
tgtgacgtcatcgacttcccctcaaccaaggcgcgcgcgctggtcgacgacgtcgcgagc
ggccgcgccttcttcggggccgaaggctacttgcctgccttcatcgatctcgcctccttc
acgtcgtacctgcccgacgacgcgctcatcctccttgaggacccgtcctccgtcaccgcc
gccgtgcgaaacgagctcggtcgcgctggggccgatcggagccacaaggaccgtgagccg
cacttcccgctggcctccttctacgaggacgaggcacacgttgcctcgtggctcggcgcg
cgtgccgtgcttgccctgcaccgcaccggggttgagggtgctgcggaaaaccggaactcg
ctggagcgcttcgaggtcgtccctgaggacgtcccgtcgctcgcgacgcgcgaccagtcg
gacctcgagcgcgccatcaagacggctcgcgcgtcacgcggcaagcacggcgctctcgac
ccgctcgttcgtcgcgtggtcgcctggcaagaagcaggcctacgagttcttatcgctgca
cgcgcgcagacccaggttgagcgcctcgtcgccctgctccgccatcgcgacgtgcgggtg
aaggccaacctgggtccgttcgaccccgcgttcttcgatggcagcagctccgcctctccg
cgcgacacggccctcgtcgtcacgggctctcttgcgcgcggcgtcatcgctcctgccgag
gggctcgcgctggtcacggaggaggaaatcttcggtgcccgcgctcaccgccgcgccgca
cgcgccgccgcctcctccacgaagccgtcgcaggccttcctcgaggacctccgcaacctc
ggcgtcggcgaccacgttgtccacgtagagcacggcatcgggcggtatcttggcctcgtc
cacaagcaggtcgggtcaaccacggtcgatctcatcgccgtcgagtacgccggcggcgac
aagctctacctcccggtctaccgcctgaaccagatccagaagttcagcggcggcgaaggc
acccccaagctcgatcggctcggcgggcagacgttcgccaagacaaaggcgcgggtcgag
aagagcgtccgcaagatggccgacgagctcctccgcctctacgccgagcgccgcgccgcc
acggcggagcccgttccaccgccggacgacgattaccgcgccttcgaagcgaccttcccc
ttcgacgagacgcccgaccaggcccgggcgatcaccgaggttacggccgacctcgagtcc
ggccgtccgatggaccgcctcgtctgcggcgatgtcgggttcggaaagaccgaggttgcc
atccgcgccgccttccgcgccgcaaacgccggcaggcaggtcgccgtcctctgcccaacc
acggtgctcgcgcagcagcactacctcagcttccgatcccggatggcctcctaccccatc
gaggtccgcgtcatgtcccgcttccagagcaagcaggagcaggacgaggtctcccgcggc
ctccgcgacggcagcgtcgacgtcgtgatcggcacccaccgcctcctctccaaggacgtc
cacttcaagcggctcggcctcctcgtcgtcgacgaggagcagcgcttcggcgtcacccac
aaggagcgtatcaaggcgctcaagaccaacgtcgacgtcctcacgctctcggccaccccc
atcccccgtaccctccagatggcggtctccggcctccgcgacatgtcgatcatcacgacc
cccccggtcgatcgccgcgccatccgcaccgtggtgacccgccacgacgaggccgtcctc
cgcgaggccgtcctccgcgagctcggccgcggcggccaggtgttctacgtctacaaccgc
gtcgagggcctctacgagcgcgccgcccgcctcgccgagctcgtcccgagcgcccgcatc
tgcgtcgcccacggccagatgagcgagcagagcctcgagcaggcgatgctcgacttcgtc
gaggggcgctacgacgtcctctgcgccaccgccatcatcgagagcggtctcgacatcccc
cgcgccaacacgatcctcatcgaccgcgccgacatgttcggcctctcgcagctctaccag
ctgcgcggccgcgtcggccgctccaaggagcgcgcttactgctacctcatcgtcccgccc
ccgaacgccatgaccgacgaggcccgcgcccgcatcgaggccctcgagcgccacaccgag
ctcggctccggcttccagatcgcctcgctcgacctggagcttcgcggctccggcgacctc
ctcggcgccgagcagagcggcaccgtcgcccaggttggcttcgagctcttctgccagatg
ctcgacgaggccgtccacgagctgcgcggcgaacccgtggtccacgacgtcgacaccgag
ctctccttcgacgccgacgcgcttctgccagaagagtatatttccgacgtaggcgtacgc
ctctccctctacaagcggctcgccggtgccgcctcgaccgaggacgtgcaggatctcgcg
gtcgagatggaggatcgcttcggcccgcctccgctcgaggcgcgccggttcgtgcacctc
atgcggctcaagaccgagctgcgccggctgaaggcgctcgcatgcgaggcgagcgccaag
ggcgtgacgctgcacttgcgcgaggacaccccgctcgatcatgccaaggtgctcaagctg
gtccagccgaaggcctcaccctaccgactctcgcccgacatgcgcctcacccgccgagcc
aaggagggcgaagccttcacgagcggtctcgaggcgaccgacaagctcctgagcgagctc
gccggctgtctcaaggatggcagcgatctagcatag
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integrated database retrieval system
