Sorangium cellulosum So ce56: sce5308
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Entry
sce5308 CDS
T00634
Symbol
deaD3
Name
(GenBank) High confidence in function and specificity
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scl
Sorangium cellulosum So ce56
Pathway
scl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
sce5308 (deaD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scl03019
]
sce5308 (deaD3)
03009 Ribosome biogenesis [BR:
scl03009
]
sce5308 (deaD3)
Enzymes [BR:
scl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
sce5308 (deaD3)
Messenger RNA biogenesis [BR:
scl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
sce5308 (deaD3)
Ribosome biogenesis [BR:
scl03009
]
Prokaryotic type
rRNA helicases
sce5308 (deaD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CAN95471
UniProt:
A9FX17
LinkDB
All DBs
Position
complement(7461044..7462942)
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AA seq
632 aa
AA seq
DB search
MNPDSSLDALPAPLAGALARRGFTSLTPVQQAVLAPELAGRDLRVSSQTGSGKTVAIGLA
LAPRLERALADRAAAAAPDGAPRTAAAPAAVIIAPTRELAAQIAGELSWLLSPLGARVAC
VTGGTSFGAEARSLRRDPLVIAGTPGRLLDHLDRGTLDPRGVLALVLDEADQMLDLGFRD
DLEAIVGKMPGDRQTHLVSATFSREVRALADRFQRDAVSVEGTRPGAANGDIAHVAHLVL
PAERDAAVVNLLLLAPGERTLVFVRTREGAAELADKLTALGLPARALSGDLEQRERTRTL
DAFRSGAITTLVATDVAARGIDVPEVGRVIHADPPGDPEIFTHRSGRTGRAGRKGTSVLL
VAPFAREHALRLLRRARVEATFRPAPSPDDVLRAADERLAAELAAVRLEGAAAGDAAAGD
AAVVDANVRGPREASGPAPEARHRQLAARLLADMDATELVAALLARAKHTGPCAPQPVTA
VAPPRSEPPPSRARPPAPPWSGAPSRARPPAPPWSGAPSRARSSAPPWSEAPSRARPAAR
QGNGEQPPRLPFVPFQVNWGERHGADPRRLLALVCRRGGVSSQQIGAIRIGSTASVVEVA
SPAAPEFARAVNQPDARDARIRIVRASSMRVE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaatccagactcatcgctcgacgccttgcccgcgccgctcgcgggcgccctcgcccgc
cgcggcttcacctccctcacccccgtccaacaggctgtcctcgcccctgagctcgccggg
cgggaccttcgtgtctcgtcgcagaccggctccggaaagaccgtggccatcggcctcgcg
ctcgccccccgcctcgagcgcgccctcgccgaccgcgccgccgcggccgcgcccgacggc
gcgccccggaccgcggcggctccggccgcggtgatcatcgcgccgacgcgcgagctcgcc
gcgcagatcgccggtgagctcagctggcttctctcgcccctcggcgcgcgcgtcgcgtgc
gtcaccggcggcacgagcttcggcgccgaggcgcgctcgctgcggcgcgaccccctggtc
atcgccgggacgcccggccgcctgctcgatcacctggaccgcgggaccctcgacccgcgc
ggcgtcctcgccctcgtgctcgacgaggcggaccagatgctcgacctcggcttccgcgac
gacctcgaggcgatcgtcggcaagatgcccggggatcgccagacccacctcgtgtcggcc
accttctcccgcgaggtccgggcgctcgccgatcgcttccagcgggacgcggtgagcgtc
gagggcacgcgccccggcgccgcgaacggcgacatcgcccacgtcgcccacctcgtgctg
ccggcggagcgcgacgcggcggtcgtgaacctgctgctcctcgcgcccggcgagcgcacg
ctcgtcttcgtgcgcacccgcgagggcgccgccgagctcgccgacaagctcaccgcgctc
ggcctgcccgcgcgcgccctgagcggcgacctcgagcagcgcgagcggacccgtacgctc
gacgcgtttcgctcgggcgccatcacgaccctcgtcgcgaccgacgtggccgcgcgcggc
atcgacgtccccgaggtcgggcgcgtcatccacgccgatcccccgggcgatcccgagatc
ttcacgcaccggagcggccgcaccggccgggcgggccgcaaggggacgagcgtgctgctc
gtcgcgccgttcgcgcgagagcacgcgctgaggctgctccggcgcgcgcgcgtcgaggcc
acgttccggccggcgccgtcgccggacgacgtgctccgcgccgccgacgagcggctcgcc
gccgagctcgccgcggtgcgcctggagggcgcggcagcgggcgacgcggctgcgggcgat
gcggccgtggtggatgcgaacgtgcgcggcccccgcgaggcgtccggccctgcccccgag
gcgcggcacaggcagctcgccgcgcgcctgctcgcggacatggacgcgaccgagctcgtc
gcggccctcctcgcgcgggcgaagcacaccggcccctgcgctccgcagcccgtcaccgcc
gtcgcgccgccccgctccgagccgcctccgtcgcgcgcccggccgccggcgccgccctgg
tccggggcgccgtcgcgcgcccggccgccggcgccgccctggtccggggcgccgtcgcgc
gcccggtcctccgcgccgccctggtccgaggcgccgtcgcgcgctcgccccgccgctcgt
cagggcaacggggagcagcccccgcgcctccccttcgtgccgttccaggtcaactggggg
gagcgccacggcgcggacccccggcgtctgctcgccctcgtgtgccgccgcggcggcgtg
tcgagccagcagatcggcgcgatccgcatcggctccaccgcgtccgtcgtcgaggtggcg
tcccccgccgcgcccgagttcgcgcgcgcggtcaaccagcccgacgcgcgcgacgcgcgg
atccgcatcgtccgcgcgagctcgatgcgcgtcgagtag
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