Sorangium cellulosum So ce56: sce6384
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Entry
sce6384 CDS
T00634
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
scl
Sorangium cellulosum So ce56
Brite
KEGG Orthology (KO) [BR:
scl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scl03019
]
sce6384 (hrpA)
Enzymes [BR:
scl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
sce6384 (hrpA)
Messenger RNA biogenesis [BR:
scl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
sce6384 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_25
AAA_30
T2SSE
NACHT
PhoH
PAS_4
SRP54
Helicase_RecD
AAA_23
TsaE
Zeta_toxin
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
CAN96551
UniProt:
A9GK92
LinkDB
All DBs
Position
8901802..8905593
Genome browser
AA seq
1263 aa
AA seq
DB search
MLPPRPTVSHRVPQEQPPAPPSPGGRTSSPPASGGPVRFPEELPISARVRDIARAIEAHQ
VVIVAGETGSGKTTQLPKICLAMGRGLSARIGVTQPRRIAATSVAARVAKELGVELGKEV
GYKIRFSDRTSPATYVKYMTDGIVLAEIQGDPRLSGYDTLIIDEAHERSLNIDFLLGYLK
RLLPKRPDLRVIVSSATLETDRFAAYFGGAPVIEVSGRTYPVEVIHRRPESGEAEVADAV
AATVEEITSIDPRGDILVFLPGEREIHDTMAELTRHGLPHTTLLPLYGRLPQSDQQRVFQ
SLPGRRIVLATNVAETSLTIPGIVYVIDSGLARVNRYSPRTGVTQLQIEPISRASADQRK
GRAGRVQSGVCFRLYDEQDDRARPAYTDPEILRVGLSGVILQMKALGLGAIEDFPFLDAP
SKRAVDEGYRVLEELGALDDAGELTDIGRKLARLPLDPRLGRMVLGGESEGALAEVLIIA
AALGVQDPRERPLAAQKQADDAHRKFKDEASDFVGLLKLWSFYQDAQGRLTQNQLRKACR
DHFVSYLRMREWADVHRQISRITKEMGFSPNDAPAKGDAIHRALLPGLLSRIGMWNQENK
VYLGARQTRFQLHPSSGLAKKPPAWIMAAELVETSQLFARMAAALDPAWIEAAAGPLCKR
SHSDPHWAAKPAAVMAREQVTLYGLPIARDRRVDFGAIDPKSARQIFLVHALVRQEYATR
APFMEANRRLFEEVSRLRDKARRSEMLADEHALELFFDRRVPEGVYSGKTFEAWRKEAEA
EDPRALHLSLADVLLDEAADLTPERFPDSLDLYGAAVPLSYRFDPGEDDDGISLSLPLVL
LPQADPDELEWMIPGWHAEKIAQLLESLPKSLRKALVPLREVAREIAAELRPFQGPLRPA
LARAVEDRTAERVPADAFRPQDLPPYLRFYFRVLDEDGRVIGEGRELRELKERLSGRARE
AWARVGKAGLERDGLTSFSVEALPERVQVDAGRHKVFGYPALIDGETSVSVRVLASRAAA
AEATRAGLRRLLLLQLGGKMSQLEQPLRSAVAVSGLGAKVAPGEPGLARQIALRALDEAF
QLGDPGAFPRTKAAFQARLDKGRGSLQGVLGKLAGLAREIGVELDRVQAMLRSMTGKPGA
PRPALDDVRTQVDFLLPVGLFSRAPIDRLAHLPRYLRAAQIRLERLPNGPQKDQSKAAQV
LPFWQDYLKHQQGLRDKGVPAEELESFRWLIEELRVSLFAPELKAAVPVSPQRLTEQWKR
LLG
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
gtgctaccccctcgccccaccgtgagccaccgcgttccgcaagagcaaccccccgccccg
ccctcccccggcggccggacctcgtccccgcccgcgtcggggggcccggtccgctttccc
gaggagctgcccatctcggcgcgggtgcgcgacatcgcccgggccatcgaggcgcaccag
gtcgtgatcgtcgcgggcgagaccggctcgggcaagaccacgcagctgcccaagatctgc
ctggccatgggccgcggcctctccgcgcggatcggcgtcacgcagccgcgccgcatcgcc
gccaccagcgtcgcggcccgcgtcgccaaggagctcggcgtcgagctcggcaaggaggtc
ggctacaagatccgcttctcggacaggacgagcccggccacctacgtcaagtacatgacc
gacggcatcgtcctcgccgagatccagggcgatccgcggctctcgggctacgacacgctc
atcatcgacgaggcccacgagcgcagcctcaacatcgacttcctgctcggctacctcaag
cgcctgctgccgaagcgcccggatctccgcgtcatcgtcagctccgcgacgctcgagacc
gaccggttcgcggcctacttcggcggcgccccggtcatcgaggtctccggccgcacgtac
cccgtggaggtcatccaccgccgcccggagagcggagaggccgaggtcgccgacgccgtc
gccgccacggtcgaggagatcacctcgatcgatccgcgcggggacatcctcgtcttcctc
ccgggagagcgggagatccacgacaccatggcggagctcacgcgccacggcctgccgcac
accacgctgctgccgctctacgggcggctccctcagagcgaccagcagcgcgtgttccag
tccttgccggggcggcggatcgtgctcgcgaccaacgtcgcggagacgtcgctcaccatc
ccgggcatcgtgtacgtcatcgactccgggctcgcccgcgtcaaccgctacagcccgcgc
acgggcgtcacccagctccagatcgagcccatctcgcgcgcgagcgccgatcagcgcaag
gggcgcgcgggccgcgtgcagagcggcgtgtgcttccggctctacgacgagcaggacgac
agggcgcggcccgcgtacaccgatccggagatcctgcgcgtcggcctctcgggcgtcatc
ctccagatgaaggcgctcgggctcggcgcgatcgaggatttccccttcctcgacgcgccg
tcgaagcgcgccgtggacgagggctaccgggtcctcgaggagctcggcgcgctcgacgac
gcgggcgagctcacggacatcggcaggaagctcgcgcggctgccgctcgacccgcggctc
ggccggatggtcctgggcggcgagagcgagggggcgctcgccgaggtgctgatcatcgcc
gcggcgctcggcgtgcaggatccgcgggagcggccgctcgccgcccagaagcaggccgac
gacgcgcaccgcaaattcaaggacgaggcctccgatttcgtggggctgctgaagctgtgg
agcttctaccaggacgcgcagggccggctgacccagaaccagctcaggaaggcctgccgc
gaccatttcgtctcgtacctccgcatgcgcgagtgggccgacgtccaccggcagatcagc
cggatcacgaaggagatggggttctcgccgaacgacgcgcccgcgaagggcgacgccatc
caccgcgcgctcctgcccggcctgctcagccgcatcggcatgtggaaccaggagaacaag
gtgtacctgggcgcccggcagacgcgcttccagctccacccgtcgtcgggcctcgcgaag
aagccacccgcgtggatcatggccgccgagctggtcgagacgtcgcagctcttcgcccgg
atggcggcggccctcgatcccgcgtggatcgaggccgcggccgggccgctctgcaagcgc
agccacagcgacccgcactgggccgcgaagccggcggccgtgatggcccgggagcaggtg
acgctgtacgggctgccgatcgcgcgggatcgacgggtcgacttcggggcgatcgacccg
aagtccgcgcgccagatcttcctcgtccacgcgctggtccggcaggagtacgcgacgcgc
gcgccgttcatggaggcgaaccggcggctcttcgaggaggtcagccggctgcgcgacaag
gcgaggaggagcgagatgctggccgacgagcacgcgctcgagctcttcttcgaccggcgc
gtgcccgagggcgtctatagcggcaagacgttcgaggcgtggcggaaggaggccgaggcg
gaggacccgcgggcgctccacctgtcgctcgccgacgtcctgctcgacgaggccgcggac
ctcacgcccgagcgcttccccgattcgctcgacctctacggcgccgccgtgccgctctcc
taccgcttcgatccgggcgaggacgacgacggcatctccctctcgctgccgctcgtgctc
ctgccgcaggccgatcccgacgagctcgagtggatgatccccgggtggcacgccgagaag
atcgcgcagctgctcgagtcgctgccgaaatcgctccgcaaggcgctcgtccccctccgc
gaggtcgcccgggagatcgcggcggagctacggccgttccagggcccgctgcggccggcg
ctcgcgcgcgcggtcgaggaccgcaccgccgagcgcgtgcccgccgacgcgttccggccc
caggatctgccgccgtacctgcgcttttatttccgcgtgctcgacgaggacggccgtgtg
atcggcgaggggcgcgagctccgggagctcaaggagcggctgtccggccgggcgcgcgag
gcctgggcgagggtcggcaaggcgggcctggagcgggacgggctcacgtcgttcagcgtc
gaggcgctgcccgagcgcgtccaggtcgacgccgggcgccacaaggtgttcggctacccg
gcgctgatcgacggggagacgtccgtgtcggtgcgcgtgctcgcctcgagggccgcggcg
gccgaggcgacgcgcgccgggctgcggcggctcctcttgctgcagctcgggggcaagatg
agccagctcgagcagccgctgcggagcgccgtggccgtgagcggcctcggcgccaaggtg
gccccgggcgagccaggcctcgcccggcagatcgcgctgcgcgcgctcgacgaggcgttc
cagctcggcgatcccggcgcctttccgaggacgaaggccgcgttccaggcgcgcctggac
aagggccgcgggtcgctgcagggcgtgctcgggaagctcgcggggctggcgcgggagatc
ggcgtcgagctcgaccgcgtgcaggcgatgctccggtcgatgacgggcaagccgggcgcg
ccccggccggcgctcgacgacgtgcgcacgcaggtcgacttcctgctgccggtcgggctc
ttctcgcgcgccccgatcgaccggctcgcgcacctgccccggtacctgcgcgccgcgcag
atccggctcgagcggctgcccaacgggccgcagaaggaccagagcaaggccgcgcaggtg
ctgccgttctggcaggactacctcaagcaccagcaggggctgcgcgacaagggggtgccc
gcggaagagctggagtcgttccgctggctgatcgaggagctcagggtgtcgctcttcgcg
cccgagctgaaggcggccgtccctgtctcgccgcaacggctcacggagcagtggaagcgg
ctgctgggatag
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