Spiroplasma clarkii: SCLARK_001098
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Entry
SCLARK_001098 CDS
T05330
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
scla
Spiroplasma clarkii
Brite
KEGG Orthology (KO) [BR:
scla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scla03019
]
SCLARK_001098
03009 Ribosome biogenesis [BR:
scla03009
]
SCLARK_001098
Enzymes [BR:
scla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCLARK_001098
Messenger RNA biogenesis [BR:
scla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCLARK_001098
Ribosome biogenesis [BR:
scla03009
]
Prokaryotic type
rRNA helicases
SCLARK_001098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
PhoH
ApbA
Motif
Other DBs
NCBI-ProteinID:
ARU91667
LinkDB
All DBs
Position
complement(909701..911059)
Genome browser
AA seq
452 aa
AA seq
DB search
MKFSDFGFKKFLNDALVEIGFQEPTSIQTKVIPYLKKHQAVIAQSHTGTGKTHAFLLPIL
NNLDYTMAKVQFLIITPTRELARQIYDNIKTLLEFQTQASMALYVGGDDLKKQQEALKTS
QPMIVVGTPTRLRSLYEENYLQLTTANYVVLDECDMVFDLGFIDDVDFMIEKINRQAIIS
LFSATVSNAIKPFLLKYFSRAIFIENLDNKPSNKNIEHILVWTKDKENKAVLKIIKEAIN
PYLVVIFVNKKDQVPEVVSWLREFGIKNIGELHGDLDARTRTNMQKRIQNMEFKWIVASD
VASRGIDIVGVSHVISIDLPKDLQYYIHRSGRTGRNNYLGQSYVLFNSTNQSQIDALKGM
GIEFTNKKLVGSELVQINDSKKKKSFNPQAPAVIEENKIISRYHKKKVKPGYKKKRKAEI
DKVKKEIRKNILKNQLLKSKRKIQKRREDLFE
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcagattttggtttcaaaaagtttttgaatgatgctttagttgaaattggt
tttcaagaaccaacttcaattcaaactaaagtaattccttatttaaaaaaacaccaagca
gtcattgctcaatctcatactggaacaggaaaaactcatgcgtttttactgccaatttta
aataacttagattacacaatggctaaagtacaatttttaattattactccaacaagagaa
ctagctcgtcaaatttatgataatatcaaaaccttattggagtttcaaacccaagcttca
atggctttatatgttgggggagatgacttaaaaaaacaacaagaagctttaaaaacaagt
caacccatgattgtggtaggaactccaactcgtttgcgaagtttgtatgaagaaaattat
ctgcaactaaccacagcaaattatgtagttttagatgaatgtgatatggtatttgattta
ggatttattgatgatgtggattttatgattgaaaaaattaatcgccaagctattattagt
ttattttcagcaacagttagtaatgctattaaaccatttttactaaaatacttttctaga
gcaatttttattgaaaaccttgataataaaccaagtaataaaaatattgaacatatttta
gtttggacaaaagataaagaaaacaaagcagttttaaaaatcattaaagaagcaattaat
ccatatttagtggtaatttttgttaacaaaaaagatcaagttccagaagttgttagttga
ttgagagaatttggaattaaaaacattggtgaactacatggagatttagatgctcgaact
cgtaccaatatgcaaaaaaggatccaaaatatggaattcaaatgaattgtggctagtgat
gtagcttcaagaggaattgatattgtgggagtaagtcatgttatttcaattgatttacca
aaagatttacagtactacattcaccgtagtggtcgaactgggcgtaacaactacttggga
caaagttatgttttatttaattcaaccaatcaaagtcaaattgatgctttgaaaggtatg
gggattgaatttaccaataaaaaattagttggtagtgaacttgtccaaattaatgactca
aaaaagaaaaaaagttttaatccccaagctcctgcagtaattgaagaaaataaaataatt
agtcgttatcataaaaaaaaggttaaaccaggttataagaaaaaaagaaaggctgaaatt
gataaagttaaaaaagaaattagaaaaaacatattaaagaatcaattgctaaagtcaaaa
agaaaaatacaaaaaagaagagaagatttatttgaataa
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