Spiroplasma clarkii: SCLARK_001401
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Entry
SCLARK_001401 CDS
T05330
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
scla
Spiroplasma clarkii
Brite
KEGG Orthology (KO) [BR:
scla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scla03016
]
SCLARK_001401 (truB)
Enzymes [BR:
scla01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SCLARK_001401 (truB)
Transfer RNA biogenesis [BR:
scla03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SCLARK_001401 (truB)
Prokaryotic type
SCLARK_001401 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Rad17
Motif
Other DBs
NCBI-ProteinID:
ARU91926
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All DBs
Position
complement(1138718..1139569)
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AA seq
283 aa
AA seq
DB search
MVYKIKKKFNVKKIGHAGTLDPLATGVMVVLVNQATKISNFLLSSDKTYVVEMQLFTETD
SGDKTGIVVKSEPFVKLKKQLVKSVVAKYNGYIYEQYPPIYSAVKVEGKKLYEYARSGQD
VEIKPRTVTINQCNLLKFNAKTGIVKLKIACSKGTYIRSLVKDIATDLETIATVISLERT
ASGSFDLKETKSIEKIQTSDLISMYDGLLKNGQTLIEYHKTIDIIQGKAITLPKQNVPYV
FVIDSHKAVLAIYKWVAHNLYNCQRGLWDPEILEKLSEAERDF
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
gtggtttataagattaaaaagaagtttaatgtcaaaaaaattggtcatgcaggtacctta
gatcctttggcaactggggtaatggtggttctggttaaccaagccactaaaatttcaaac
tttttgttatctagtgacaaaacctatgttgtagaaatgcaattatttacagaaacagat
agtggtgataaaactggaattgttgttaaaagtgaaccatttgttaagttaaaaaaacaa
ctagttaagagtgttgtggcgaaatataatggttatatctatgagcaatatcccccaatt
tattctgcagtcaaagttgaaggtaaaaaactttatgaatatgctcgcagtggtcaagat
gtagaaattaaaccccgaacagtgacaattaatcaatgtaatttattaaaatttaatgct
aaaacaggaatagtaaaattgaagatagcatgtagtaaaggcacttacattaggagttta
gtaaaagatattgcaacagacttagaaacaattgccacggttattagtttagaacgaact
gcaagtgggagttttgatttaaaagaaactaaatcaattgaaaaaattcaaacctcagat
ttaatttctatgtatgatgggttacttaaaaatggtcaaaccctaattgaatatcacaaa
actattgatattattcaaggtaaagcgattactttgccaaaacaaaatgttccctatgtt
tttgtcattgattctcacaaagctgttttggcaatttacaaatgagttgctcataactta
tacaattgtcaacggggtttatgagatccagaaatcttagaaaagttatctgaagcagaa
agggatttttaa
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