Streptomyces clavuligerus: BB341_10530
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Entry
BB341_10530 CDS
T04717
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sclf
Streptomyces clavuligerus
Pathway
sclf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sclf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BB341_10530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclf03021
]
BB341_10530
03400 DNA repair and recombination proteins [BR:
sclf03400
]
BB341_10530
Enzymes [BR:
sclf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BB341_10530
Transcription machinery [BR:
sclf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BB341_10530
DNA repair and recombination proteins [BR:
sclf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BB341_10530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
ANW18638
LinkDB
All DBs
Position
complement(2658523..2662422)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDDERRTRDLPSLEAHVSVERQQIENRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEEREVRGE
GRSFGSTAEAIMAFDARELSLQAKVDIRFPVGTIPPRGWTPPAREEGEPEWQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFHWAT
RSGVTVAVSDIVVPEAKKAIVASYEAKDEKIQKQYERGLITKQERTHELIENWTRATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLRIAEKS
AEGVLRKTDDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDALVNAGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVSPISEAAGRVRIEETEKTKKIVVTPDDGSDETAFPISKRARL
LVGEGDHVEVGQKLTVGATNSHDVLRILGQRAVQVHLVGEVQRVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGFKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGSGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagcttcggatcggcctggccaccgctgacgacatc
cgccagtggtcgcacggcgaggtcaagaagcccgagacgatcaactaccgcacgctcaag
ccggaaaaggacgggctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggtgtc
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggtgtcccgtcccgtctgggctacctgctggacctc
gcgccgaaggacctggagaaggtcatctacttcgccgcgtacatgatcacgtacgtggac
gacgagcgccggacccgcgacctgccctcgctggaggcccatgtctccgtcgagcgccag
cagatcgagaaccgccgcgacgccgacctcgaagcccgcgccaagaagcttgagaccgac
ctggccgagctggaggccgagggcgccaaggcggacgtgcgccgcaaggtgcgcgaaggc
gccgagcgggagatgaagcagctccgcgaccgcgcccagcgcgagatcgaccgcctcgac
gaggtgtggagccgcttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacctacttcgacggctcgatgggcgccgccgcg
ctccagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctccagaccagcaacagccccaagggcatggtgctggactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccggaacaaccgcctcaagcgtctccttgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggtccgggcaaccgtccgctgaag
tccctcagcgacatgctcaagggcaagcagggccgcttccgtcagaacctcctcggcaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctcaagctgcaccag
tgcggtctgccgaaggcgatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggtcgc
accgtggtgtacgacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccaccctgcaccgcctcggcatccaggccttcgagccgcagctcgtcgagggcaag
gccatccagatccacccgctcgtctgtaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtgaccatgccgacccaggac
atggtgctgggcctcttcttcctcaccacggacgaggaggagcgcgaggtgcgcggagag
ggccggtccttcggctccaccgccgaggcgatcatggcgttcgacgcccgtgagctctcc
ctccaggccaaggtcgacatccgcttcccggtgggcaccatcccgccgcgcggctggacc
ccgccggcccgtgaggagggcgagcccgagtggcagcagggggacagcttccgcctgcgc
accacgctgggccgcgcgctcttcaacgagctgctgcccgaggactaccccttcgtcgac
tactcggtcggcaagaagcagctctccgagatcgtcaacgacctcgccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggcgggcttccactgggccact
cgttccggcgtcaccgtcgccgtctcggacatcgtcgtcccggaggcgaagaaggcgatc
gtcgcctcctacgaggccaaggacgagaagatccagaagcagtacgagcgcggtctgatc
accaagcaggagcgcacgcacgagctgatcgagaactggacccgcgcgaccaacgaggtc
gccgaggcgatgaacgcgaacttcccgaagaccaaccccatcttcatgatggtggactcg
ggtgctcgtggaaacatgatgcagatgcgtcagatcgccggtatgcgtggtctggtgtcg
aacgccaagaacgagaccatcccgcgtccgatcaaggcgtccttccgcgagggtctgtcc
gtgctggagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgccctg
cgtaccgccgactcgggttacctcacccgtcgtctggtggacgtctcgcaggacgtcatc
atccgcgaggaggactgcggcaccgagcgcggtctcaagctgcggatcgccgagaagagc
gccgagggtgtgctccgcaagaccgacgacgtcgagacgtcggtgtacgcgcggatgctc
gccgaggacgtcgtcgtcgacggcaaggtcatcgcgcccgccaatgtcgacctcggcgat
gtgctgatcgacgcgctggtcaacgccggtgtcgaggaggtcaagacccgctcggtcctg
acctgtgagtccgcggtcggcacctgtgccttctgctacggccgctcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccccgagtcgtcgagctcttcgaggcccgtacgccgaagggtgtctccccg
atctcggaggcggccggccgcgtccggatcgaggagaccgagaagaccaagaagatcgtc
gtcaccccggacgacggcagcgacgagacggccttcccgatctcgaagcgcgcccgtctg
ctggtgggcgagggcgaccacgtcgaggtgggccagaagctcaccgtgggtgccaccaac
tcgcacgacgtgctgcgcatcctcggccagcgggccgtccaggtccacctggtcggcgag
gtccagcgggtgtacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctccgccgggtgacgatcatcgagtccggcgacgccgagctgctgccc
ggcgagctggtcgagcgctcgaagttcgagaccgagaaccgtcgtgtggtcaccgagggt
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcgtcgctggccacc
gagtcctggctgtcggcggcgtccttccaggagaccacccgggtgctgaccgacgcggcg
atcaacgccaagtcggactccctgatcggcttcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctgtcccgttaccgcaacatccgggtggagcccaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
tccggctccggccaggccgtgccgctggaggactacgactacggtccgtacaaccagtaa
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