Streptomyces clavuligerus: BB341_11040
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Entry
BB341_11040 CDS
T04717
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sclf
Streptomyces clavuligerus
Brite
KEGG Orthology (KO) [BR:
sclf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sclf03016
]
BB341_11040
Enzymes [BR:
sclf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BB341_11040
Transfer RNA biogenesis [BR:
sclf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BB341_11040
Prokaryotic type
tRNA splicing ligases
BB341_11040
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ANW18726
UniProt:
B5H409
LinkDB
All DBs
Position
complement(2769097..2770302)
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AA seq
401 aa
AA seq
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MSYVEVPGEQTPIRMWTDPASVEHQAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMEGAVCPAAVGVDIGCGMSAVKTSLTAEDLPGDLSRLRSLIEQAIPVGRAGHPDPVDVS
RVFGFSAVAGSGRWDDFWSRFDGVADAVKFRRERAALQMGTLGGGNHFVELCLDESGAVW
LMLHSGSRNIGNVLAEHHMGVARGLPHNQGIVDRDLAVFVSGTPQMDAYRNDLYWAQEYA
QHNRAIMMGLFQEVVRREFRKAKVTFEPVISCHHNYVSEERYEGVDLLVTRKGAIRAGSG
EYGIIPGSMGTGSYIVRGLGNEKSFNSASHGAGRRMSRNQAKKRFSTEDLAAQTRGVECR
KDAGVVDEIPGAYKPIEQVIDQQRDLVEVVARIKQVICVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtagaggtgccgggagagcagacgcccatccggatgtggacggatcccgcg
tcggtcgagcatcaggcgatgcagcagctccgcaatgtcgccaccctgccctggatcaag
ggtctggccgtgatgccggacgtccactacggcaagggcgccacggtcggctcggtgatc
gcgatggagggggccgtctgccccgccgcggtcggtgtcgacatcggctgcggcatgtcc
gccgtgaagacctcgctgaccgccgaggacctgcccggcgacctctcccggctgcgctcc
ctgatcgagcaggcgatcccggtgggccgggccggacacccggacccggtggatgtctcg
cgggtcttcggcttctccgccgtcgcgggctccggccgctgggacgacttctggagccgc
ttcgacggggtggcggacgcggtgaagttccgccgggagcgggccgccctccagatgggc
accctgggcggcggcaaccacttcgtcgaactgtgcctggacgagtccggcgccgtctgg
ctgatgctccactccggctcccgcaacatcggcaatgtgctcgccgagcaccacatgggc
gtcgcccgcggcctcccgcacaaccaggggatcgtcgaccgcgacctcgccgtcttcgtc
tccggcaccccgcagatggacgcgtaccgcaacgacctgtactgggcgcaggagtacgcc
cagcacaaccgcgcgatcatgatgggcctcttccaggaggtcgtccggcgcgagttccgc
aaggcgaaggtcacgttcgagccggtcatctcctgccaccacaactatgtctcggaggag
cggtacgagggggtggacctcctcgtcacccgcaagggcgcgatcagggcgggcagcggc
gagtacgggatcatccccggttccatgggcaccggctcgtacatcgtgcgcggtctgggc
aatgagaagtcgttcaactccgcctcccacggcgcgggccgccggatgagccgcaaccag
gcgaagaagcggttctcgaccgaggacctggcggcgcagacccggggtgtggagtgccgc
aaggacgccggtgtggtcgacgagatccccggcgcgtacaagccgatcgagcaggtgatc
gaccagcagcgggacctggtcgaggtcgtcgccaggatcaagcaggtcatctgcgtcaag
ggctga
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