Sphingobium cloacae: SCLO_1007720
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Entry
SCLO_1007720 CDS
T05301
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sclo
Sphingobium cloacae
Pathway
sclo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCLO_1007720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclo03019
]
SCLO_1007720
Enzymes [BR:
sclo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCLO_1007720
Messenger RNA biogenesis [BR:
sclo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCLO_1007720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAV63812
UniProt:
A0A1E1F005
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All DBs
Position
SCLO_1:complement(907441..908814)
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AA seq
457 aa
AA seq
DB search
MQFTDLGLAEPILKALAAKNYATPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL
DHFARHPKQTPLNGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIKA
LSRGVDIVVATPGRLLDLLDQRAFTIKDTEIFVLDEADQMMDMGFIHPLRRIAKLLPAER
QNLFFSATMPREIEALAAQFLHDPVKVSVAPQSTTAERVRQQATFVNQAEKQALLTLTIR
NEPIDRALIFTRTKHGADRVVRFLEGAGIEAVAIHGNKSQAQRTTALQAFRHGHVKLLVA
TDIAARGIDVSGVSHVINFEMPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIE
RTTKVKLDVAPLPDNFMEAVRNLPKPAPQRKGKPQTPVQQVKRAEGQRRYQDQQKQQRGT
PDRAHRPDGDAPAKKPFRRRRSGVGAHKGAVQRTGGR
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcaccgaccttggccttgccgaaccgattctgaaggcgctggccgccaaaaat
tatgcgaccccgacgccgatccagcaaaaggcgatccccgtcctgctggaagggcgcgac
ctgtgcggcatcgcgcagaccggcacgggcaagacggcggccttcgcgctgcccagcctc
gatcatttcgcccgccatccgaagcagacgccgctcaacggctgccggatgctggtgctg
tcgcccacccgcgagctggccgcgcagatcgcgcagagcttccgcgattatggccgtttc
ctgaaactttcggtggaagtcgtcttcggcggcgttcccatcaaccgccagatcaaggcg
ctgagccggggcgtcgacatcgtggtcgcgacgccgggccgcctgctcgacctgctcgac
cagcgcgccttcaccatcaaggatacggaaatcttcgtcctcgacgaagcggatcagatg
atggacatgggtttcatccacccgctgcgccgcatcgccaagctgttgcccgcggaacgg
cagaacctcttcttctccgccaccatgcccagggagatcgaggcgctggccgcccagttc
ctgcatgatccggtgaaggtcagcgtcgcgccgcaatccaccacggcagagcgggttcgc
cagcaggccaccttcgtcaaccaggcggaaaagcaggcgctactgacgctgacgatccgg
aacgaaccgatcgatcgcgctctcatcttcacccgcaccaagcatggcgcggatcgtgtc
gtgcgctttctggaaggcgcggggatcgaggccgtcgccatccatggcaacaagagccag
gcccagcgcacgaccgcgcttcaggctttccgtcatggccatgtgaagctgttggtcgcg
accgacatcgccgcgcgcggcatcgacgtgtccggcgtcagccatgtcatcaatttcgag
atgcccaatgtgccggaacaatatgtgcaccgtatcggccgcacggcccgcgcgggggcg
gaaggtgtcgcgatcagcttcgtggcggatgacgagcggccctatctcaaggcgatcgag
cggaccacgaaggtgaaactggacgtggcgccgctgccggacaatttcatggaagcggtc
cgcaaccttcccaagcccgcgccccagcgcaagggcaagccgcagacgcccgtccagcag
gtgaaacgcgccgaaggccagcgccgctatcaggaccagcagaagcagcagcgcggtacc
ccggatcgcgcccatcggcccgatggcgacgcgcccgcgaaaaagcctttccgccgtcgc
cgtagcggcgtgggcgcacacaagggcgcggtgcagcggaccggcgggcgttaa
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