Sphingobium cloacae: SCLO_1007890
Help
Entry
SCLO_1007890 CDS
T05301
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sclo
Sphingobium cloacae
Pathway
sclo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCLO_1007890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclo03019
]
SCLO_1007890
03016 Transfer RNA biogenesis [BR:
sclo03016
]
SCLO_1007890
Enzymes [BR:
sclo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SCLO_1007890
Messenger RNA biogenesis [BR:
sclo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCLO_1007890
Transfer RNA biogenesis [BR:
sclo03016
]
Prokaryotic type
tRNA degradation factors
SCLO_1007890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
BAV63829
UniProt:
A0A1E1EZZ1
LinkDB
All DBs
Position
SCLO_1:complement(921766..924093)
Genome browser
AA seq
775 aa
AA seq
DB search
MASTQKQKKSAPVRAKVRPAGFPTRDQVMEFIASSDQPAGKREIAKAFGLKGQEKIALKA
LLKDMADEGLIDIGPARAFHKMGGVPKVTVLRIVDVDDTALIATPERWEAEGQPAPRLRV
VERGKRGALTIGDRILARTEEAGRGWVARPMKKLAKASEELLGVVEEAPANQDGGGKLWL
RPVDKRIRRDTPISDAGAAKPGDLVLAEPVGRPPRITARVTDILGDPFAPRSFSLIAIHK
HGIPHVFSDMVEEEAVAASQLPLHENKREDLRHLPIVAIDPVDARDHDDAVWAAPDDDAG
NPGGYRAIIAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGE
DRAAMACHLVIDAKGKVTSWRFSRAVIHVAAVLAYEDAQAAIDGTKDHPLLEPALKPLWA
CWALLRKAREKRDPLALDLPERRVVLDEWGKIVSVAVRERLDAHMVIEDYMIAANVAAAK
ALEAKKAPVMYRDHDPPSRDKLVALKDYLATFDIDFALGQVIRPATFNRLIERIGEAEEK
PQIMEQILRSQSQAYYSPENMGHFGLALGSYAHFTSPIRRYADLLVHRALVGAYGLEMPA
PTGGELPDRTSLSGEDYENMGRVGEMISQHERRAMEAERETVDRYVAAFLAAHVGDLVEA
RITGVQNFGFFATVEGLGGDGLVPVSTLGDERFYYDEAARALEGVESGDRYTVGQRLQLR
LAEADPINGALRFELPDALPQRPSFRKDRARPGIRRGRPANIRHMGSARGKHRKR
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgacccagaagcagaagaagtccgcgcccgtccgcgcgaaggtgcggcccgcc
ggttttccgacccgcgaccaggtgatggagttcatcgcctcctccgatcagcccgctggc
aagcgggagatcgccaaagccttcggcctcaagggacaggagaagatcgcgctcaaggcg
ctgctcaaggatatggccgacgaagggctgatcgatattggtcctgcacgagcctttcac
aagatgggcggcgtgcccaaggtcaccgtcctgcggatcgtcgacgtggacgacacggcg
ctgatcgccacgcccgaacgctgggaggcggaaggccagcccgcgccgcgcctgcgcgtg
gtcgagcgtgggaagcgcggggcgctcaccatcggcgaccggatattggcgcggacggag
gaggccggacgcggctgggtcgcgcgcccgatgaaaaagctcgccaaggccagcgaggaa
ctgctgggcgtggtggaggaagcgccagcgaatcaggatggggggggcaagctgtggctg
cgcccggtggacaagcgcataaggcgggatacgccgatttccgatgcgggggcggccaag
ccgggcgatctggtgctggccgagccggtcgggcgcccgccccgcattaccgcgcgggta
acggatatattgggcgatcccttcgcgccgcgcagcttcagcctgatcgcgatccacaag
catggcattccccatgtcttttcggacatggtcgaggaagaggccgttgccgcttcccaa
ctgccattgcatgaaaataagcgggaagatctgcgccacttgcccatcgttgccatcgat
ccggtggatgcgcgcgatcatgacgatgcggtgtgggccgcgccggacgacgatgccggc
aatccgggcggttatcgcgccattatcgccatcgccgacgtcagttactatgtgcggccc
ggcagcgctctcgaccgggaggcgcgcaagcgcgggaacagcgtctatttccccgatctg
gtcgtgccgatgctgccgcaccagctttcgtccgacatgtgttcgctgcgcgcgggcgag
gatcgggcggcgatggcctgccacctcgtcatcgatgcaaaggggaaggtgacgtcatgg
cgcttttcccgcgcggtgatccacgtggcggcggtgcttgcctatgaggacgcgcaggcg
gcgatcgacggcacaaaggaccacccgttgctggaaccggcgttgaagcctctctgggcc
tgctgggcgctgctgcgcaaggcgcgcgagaaacgcgatccgctggcgctcgatctgccg
gaacggcgcgtggtgctggacgaatggggcaagatcgtcagcgtcgcggtgcgcgaaagg
ctcgacgcgcatatggtgatcgaggattatatgatcgccgctaatgtcgcggccgccaag
gcgctggaggcgaagaaggccccggtcatgtaccgcgaccatgatccgcccagccgcgac
aagctggtagcgctgaaggattatctggcgaccttcgacatcgatttcgcgctggggcaa
gtgatcaggcccgcgaccttcaaccgcctgatcgagcgcatcggcgaggcggaagaaaaa
ccgcagatcatggaacagattctccgcagtcaaagccaggcctattacagtccggagaat
atggggcatttcggccttgcgctgggaagctacgcgcatttcacctcgcccatccgccgc
tatgcggacctgctggtgcatcgggcgctggtgggcgcctatgggctggaaatgcccgcg
cccacaggtggcgagctgcccgaccgcacctcgctcagcggcgaggattatgagaatatg
ggtcgtgtcggcgagatgataagccagcatgaacgccgcgccatggaggccgagcgcgaa
accgtcgaccgctatgtcgccgcctttctcgccgcgcatgtcggcgatctggtggaggcg
cggatcaccggcgtccagaatttcggtttcttcgcgaccgtcgagggattgggcggcgat
gggctggtgccagtatcgacgctcggcgacgaacgcttctattatgacgaggcggcccgc
gcgctggagggcgtggagagcggagatcgctatacggtgggccaacgcctgcaattgcgg
ctggcggaggcggacccgatcaacggcgcattgcgcttcgaactgcctgacgccctgccg
cagcggccaagcttcaggaaggatcgcgcccgtccgggcatcaggcgcggccgccccgcc
aatatccgccacatgggcagcgcgcggggcaagcaccggaagcgctga
DBGET
integrated database retrieval system
