Sphingobium cloacae: SCLO_1011250
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Entry
SCLO_1011250 CDS
T05301
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
sclo
Sphingobium cloacae
Pathway
sclo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SCLO_1011250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclo03021
]
SCLO_1011250
Transcription machinery [BR:
sclo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SCLO_1011250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Lipoprotein_Ltp
DUF4168
Motif
Other DBs
NCBI-ProteinID:
BAV64165
UniProt:
A0A1E1F0X2
LinkDB
All DBs
Position
SCLO_1:1291539..1293584
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AA seq
681 aa
AA seq
DB search
MATKANGKASGEDTDTGDAPLLDLNEASVKKLIARAKKRGYITYDELNDALPQDQMSSEQ
IEDIMSALNEMGVNIVENEEAGEDGDDQRDDDGDDSTDSSEDEDGAPRLVTEKKKETVDR
TDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWSTALNN
GEMQLREILDLDAMLSKDPAPENLEEGAEDDDGEISEKTAGPSFKEEEEPEEEPADSDED
EDGLTERRSRRVEEEEEEDNTLSLAQMEETLKPMALEKFATITEIFRTFSNAQAARMTAM
ASGESLSQKAEDSYQELREQLTAEVESVQFHQQKIEYLVDQLYAYNRRLTALGGQMLRLA
ERHKVSRKDFLDRYVNHELDDGWLDKVSGLDKKWAAFAAAEGRAVDRIRNEVGEIAQATG
MSLSEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLH
EQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPV
DAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEA
KALRKLKHPSRSRKMRSFLDQ
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaagcgaacggcaaggcttcaggtgaggatacggatacgggcgacgcgccg
ctgctggatctgaacgaggcatcggtcaagaagctgatcgcccgcgcgaagaagcgcggc
tacatcacctatgacgaactgaacgacgccctgccgcaggaccagatgtcctccgagcag
atcgaggacatcatgtccgcgctcaacgaaatgggcgtcaacatcgtcgagaacgaggaa
gccggggaagacggcgacgaccagcgcgacgatgacggcgacgatagcaccgattcgagc
gaggatgaggatggcgcgccccggctcgtcaccgaaaagaagaaggaaaccgtcgatcgc
accgacgatccggtccgcatgtacctgcgcgagatgggcgcggtggaactgctctcgcgc
gagggcgagatcgccatcgccaagcggatcgaggcgggccgcgacacgatgatcctgggg
ctttgcgaaagccccacgaccttcaacgcgatcatcgaatggtcgactgccctcaacaat
ggcgagatgcagcttcgcgagattcttgatctcgacgccatgctgtcgaaggacccggct
ccggaaaatctggaggaaggggcagaggacgatgacggtgaaatcagcgagaagaccgct
ggccccagcttcaaggaagaggaagagccggaagaggagcccgccgattccgacgaggat
gaggacggcctgaccgaacgccgatcccgccgggtggaagaggaagaggaggaagacaac
accctctccctcgcccagatggaagagactttgaagccgatggcgctggagaagttcgcg
accatcacggagattttccgcaccttctccaacgcgcaggccgcgcgcatgaccgcgatg
gccagcggcgaaagcctcagtcagaaggcggaggacagctatcaggaattgcgcgagcaa
ctgacggccgaggtcgaaagcgtccagtttcaccagcagaagatcgaatatctggtcgac
cagctctatgcctataaccggcgcctcaccgccctgggcgggcagatgctgcgtctggcc
gagcggcacaaggtcagccgcaaggatttcctcgatcgctatgtcaatcatgagctggat
gacggctggctcgacaaggtgagcggcctcgataagaaatgggctgccttcgcggccgcc
gaagggcgcgcggtcgaccgcatccgcaacgaggtgggcgagatcgcgcaggcgaccggc
atgtctctgagcgagttccgccgcatcgtgaacatggtgcagaagggcgagcgcgaagcg
cgcatcgcgaagaaggaaatggtggaggcgaacctgcgcctcgtcatctccatcgctaaa
aaatatacgaaccgtggcctgcaattccttgatcttattcaggaaggcaatatcggcctg
atgaaagcagtcgataagttcgagtatcgccggggctacaagttcagcacctatgcgact
tggtggatcaggcaggcgatcacgcgttccatcgcggatcaggcccgcactatccgcatc
ccggtccatatgatcgaaacgatcaacaagctggtccgcacgtcccgccagttcctgcac
gaacagggccgcgagccgacgccggaggaaatggccgaacgcctctccatgccgctggag
aaagtccgcaaggtcatgaagatcgcgaaggagccgatctcccttgaaacgccgatcggc
gacgaggaggattcgcacctgggcgacttcatcgaggacaagaacgccatcatcccggtg
gacgccgcgattcaggccaacctcaaggaaaccgtgacgcgggttctggcctcgctcacc
ccgcgcgaggagcgcgtgctgcggatgcgcttcggcatcggcatgaacaccgatcacacg
ctggaggaagtgggccagcagttcagcgtgacccgtgaacgcatccgccagatcgaggca
aaggcgctgcgcaagctcaagcacccctcgcgctcgcgcaagatgcggagtttcctcgac
caataa
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