Sphingobium cloacae: SCLO_1011480
Help
Entry
SCLO_1011480 CDS
T05301
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sclo
Sphingobium cloacae
Pathway
sclo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCLO_1011480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclo03019
]
SCLO_1011480
Messenger RNA biogenesis [BR:
sclo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCLO_1011480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BAV64188
UniProt:
A0A1E1F0X3
LinkDB
All DBs
Position
SCLO_1:complement(1322870..1324507)
Genome browser
AA seq
545 aa
AA seq
DB search
MTPKDELLFLALGGSGEIGMNVNLYGCQGKWVMVDLGLTFADPAYPGVELILPDLSFIED
RRKDLLGIVLTHGHEDHIGAIPYLAADLGVPLYATPFTAGLIRLKLEEEKLTDEVELNVI
DNEGSFALGPFGFRYVPLAHSIPEGNAVLIDTPHGRIFHTGDWKLDEKPLLGAPSTPEEL
TAIGDEGVLALVCDSTNVFNAEASGSEGDVREGLMETIAGAKGRVLVTTFASNAARLQTL
GEVAQATGRRLCVAGRSLDRIIATARNAGYLKDFPPTIDWDAAMALPRHEVMIIATGGQG
EARAALSRIAFDSHPIKLDEGDLVVFSSKQIPGNEIAIGRIQNALAASGVLMITDRQAEV
HVSGHPGRPELEAMYRWIRPQILLPVHGERRHMAEQARLGLETGVPRAVVQSNGDVLRLA
PDGPEIIGHGTSGRLVLDGDVILPADGATMNERRKIALHGQISVAVALDAKGRVLGVPAL
RTQGVPVEEDKAAFLEEAAAEAAEAVAKGSQEEEALRERVRLAVRRTATRWTGKKPVVDV
LLIRA
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgacacctaaagacgagctgctcttcctggccctaggcggttcgggagagatcggcatg
aacgtcaatctttacggttgccaggggaagtgggtgatggtggacctgggtctcaccttc
gccgatccggcctatcccggcgtggaactgatcctgccggacctgtcctttatcgaggac
cggcgcaaggatctgctcggcatcgtcctcacccacgggcatgaggaccatatcggcgcc
attccctatctggcggccgaccttggcgttccgctctatgcgacgccgttcacggcgggc
cttatccggctgaagctggaagaggagaagctgacggacgaggtggaactcaacgtcatc
gacaatgagggcagctttgccctcggccccttcggtttccgctatgtcccgctggcccat
tcgatccccgaaggcaatgcggtgctgatcgacacgccccatggccgcattttccatacg
ggcgactggaagctggatgagaagcccctgctgggggctccctccaccccggaggagttg
accgccatcggcgacgaaggcgtgctggcgctggtatgcgacagcacgaatgtgttcaat
gccgaggccagcgggtccgaaggcgacgtgcgcgaaggattgatggagaccatcgccgga
gcgaaggggcgggtgctggtcacgacattcgcctccaatgccgcgcgtttgcagacgctg
ggcgaggtggcgcaggccaccggccgccgcctgtgcgtggcggggcggtcgctcgaccgg
atcatcgctacggcgcgcaatgcgggttatctcaaggattttccgccgaccatcgactgg
gacgccgcgatggcgctgccccgccatgaagtgatgatcatcgcgaccggcgggcagggg
gaggcacgcgcggcgctgtcccgcatcgcgttcgattcccacccgatcaagctggatgag
ggcgacttggtggtcttttcctccaagcagataccgggcaatgaaatcgccatcggccgc
atccagaatgcgctggcggcgagcggcgtgctgatgatcacggaccggcaggccgaagtc
catgtgtccggccatcccggccggccggaactggaagccatgtatcgctggataaggccg
cagatattgctgccggttcatggcgagcgccgccatatggcggaacaggcccggctcggg
ctggagacgggcgtgccccgtgccgtggtgcaatccaatggcgatgtgctgcgattggcg
cctgatgggccggaaatcatcggtcatgggacgagcggcaggctggtcctggatggcgat
gtcatcctgcccgccgatggcgcgaccatgaacgagcggcggaagatcgccctgcatggc
cagatcagcgtcgcggtggcattggacgcgaagggccgggtgctcggcgtgccggcgctt
cggactcagggcgtgcctgtcgaggaggacaaggcggcgtttctggaggaagccgctgcg
gaggcggccgaagcggtcgccaagggatcgcaggaggaagaggcgctgcgggaacgcgtc
cgtcttgccgtgcgccggacggcgacgcgctggacgggcaagaagccggtggtggacgtt
ctcctcattcgcgcctaa
DBGET
integrated database retrieval system
