Sphingobium cloacae: SCLO_1011810
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Entry
SCLO_1011810 CDS
T05301
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sclo
Sphingobium cloacae
Pathway
sclo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCLO_1011810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sclo03400
]
SCLO_1011810
Enzymes [BR:
sclo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCLO_1011810
DNA repair and recombination proteins [BR:
sclo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SCLO_1011810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAV64221
UniProt:
A0A1E1F189
LinkDB
All DBs
Position
SCLO_1:1358071..1361547
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AA seq
1158 aa
AA seq
DB search
MTDLPKILKAQTPLTLSGVPAGFQPWLLADMARAAFGSNGGRALFVAPDDALMRAVADTA
IYFAPEIEIVEIPAWDCLPYDRASPSLRSASARLAGLHALQAAPAGPQLAVTTLNALTQR
TLTPFRVRQLVAKLAPKERIAIQRLADMLQANGYVRTDTVHDRGEFAIRGGIVDLFPGGE
EQPLRLDFFGDEIETVRRFDPADQRTTGSIDGFTLLPASEALLDEDTIKRFRGRYRETFG
ATATGDPLYQAVSEGRRLAGMEHWLPLFEEKLVPLTDHIGANTVIILDHGVAGAAEARFE
AIRDYHANRIAAKSSDPGAYRPLDPKALYLDAGEWEAVARDWPMHATTPFHEPESAAVID
FAVDGPRDFAPERAQNANVYEAVGKHIAALQRGKKRVIIASYSNGARERLSGLLADHGVK
RLAAADDWQEALGLAATGATVLSVLHLDHGFTAPDVAVLTEQDMLGDRLVRRARRKKNAD
AFLQELATLSPGDLVVHRDHGIGRYEGLTQIPVAKAAHDCVALEYAGGDKLYVPVENLEV
LSRYGSESEGVALDRLGGEAWQRRKARMKERIREIAGELLKTAAERALRPATVAEPDAAG
YPAFVDRFPYQETDDQDRAIGDVIEDLGAGKPMDRLVCGDVGFGKTEVALRAAFVAAMAG
MQVALICPTTLLARQHHMNFVERFRGFPINIGRLSRLVPDKEAKAVKAGLADGSVDIVVG
THALLAKGLEFKRLGLVIVDEEQRFGVTHKERLKNLKTDVHVLTLTATPIPRTLQMAMSG
LRELSVIQTPPVDRLAVRTYVMPWDGVVIREALLREHYRGGQSFFVVPRISDLPDIEEFL
RTEVPEVRPVVAHGQMAAGEVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLVIHRAD
RFGLAQLYQLRGRVGRSKTRAYAYFTTPANRVITETAEKRLKVLSDLDTLGAGFQLASHD
LDIRGAGNLVGDEQSGHIKEVGFELYQSMLEDAIMEAKAGGVGLERPRDSFSPQITVDAP
IMIPEDYVPDLDLRMGLYRRINELEDRQALESFAAELIDRFGKLPAPTQNLLKIIEIKQN
CLTANIAKIDVGAKGALVSFHEDRFPNPAGLVSYIQRLNGVARLRPDSKVVVNRAWADPG
ARLNGALQLSKGLAKAAG
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgactgatctccccaaaatcctgaaggcccaaacgcccctcaccctttccggcgtcccg
gcgggtttccagccctggctgctggccgacatggcgcgcgccgccttcggctccaatgga
ggccgcgccctgttcgtcgcgcccgacgacgccctgatgcgcgccgtggccgacaccgcc
atctacttcgcgccggaaatcgagatcgtcgaaatcccggcatgggattgcctgccctat
gaccgggccagcccctcgctgcgcagcgcatcggcccgcctcgccgggcttcacgcgctg
caagccgctcctgcgggaccgcaactcgccgtcaccacgctcaacgccctgacgcagcgc
accctcacccccttccgcgtccgccagctcgtcgcgaagctcgcccccaaggaacggatc
gcgatccagcgcctcgccgacatgctgcaagcgaacggctatgtccgcaccgacacggtg
catgaccggggcgaatttgccattcgcggcggcatcgtggaccttttccccggcggcgag
gagcagcccctgcgcctcgacttcttcggcgacgagatcgagacggtccgccgtttcgac
cccgctgaccagcgcacgacagggagcatcgacggcttcaccctcctccccgcctccgaa
gccctgctggacgaggacacgatcaagcgtttccgcggccgctaccgcgaaaccttcggc
gcgaccgcgaccggcgacccgctctatcaggcggtgagcgaagggcggcgtctcgcgggc
atggagcattggcttcccctgttcgaggagaagctggtccccctcaccgaccatatcggc
gcgaataccgtcatcatcctcgaccatggcgtcgcgggcgcggcggaggcccgtttcgag
gcgatccgcgactatcacgccaaccgcatcgccgcgaaatcctccgaccccggcgcctac
cgcccgctggaccccaaggcgctctatctcgatgcgggggaatgggaagccgtcgcccgc
gactggccgatgcacgccaccacgcccttccacgaaccggaaagcgcagccgtcatcgac
ttcgccgtggacggtccccgcgacttcgcccccgaacgcgcccagaacgcgaacgtctac
gaggctgtaggaaaacatatcgccgccctccagcgagggaagaagcgggtcatcatcgcc
tcctattccaacggcgcgcgcgaacggctctccggcctcctcgcggaccatggcgtcaaa
aggctcgccgccgccgacgactggcaggaggcgctgggcctcgccgccaccggcgccaca
gtgctttcggttcttcatctcgatcatggtttcaccgcgcccgatgtcgccgtcctcacc
gaacaggacatgctgggcgaccgcctcgtccgccgcgcccgccgcaagaagaacgccgac
gccttcctccaggaactggccaccctctcccccggcgacctcgtggtccaccgcgaccac
ggcatcggccgctatgaagggctgacccagattcccgtcgccaaggccgcgcacgactgc
gtggcgctcgaatatgcgggcggcgacaagctctacgtgcccgtagaaaatctcgaagtc
ctctcccgctacggctcggaaagcgaaggcgtcgcgctcgaccgcctcggcggcgaagcg
tggcagcggcgcaaggctcggatgaaggaacgcatccgcgagatcgcgggcgaactcctc
aagaccgccgccgaacgcgccctgcgccccgcgaccgtcgcggagccggacgcggcgggc
tatcccgctttcgtcgaccgcttcccctatcaggaaacggacgatcaggaccgcgccatc
ggcgacgtgatcgaagacctcggcgcgggcaagccgatggaccgcctggtctgcggcgac
gtgggcttcggcaagacggaggtcgccctgcgcgccgccttcgtcgcggcgatggcgggg
atgcaggtcgcgctgatctgccccaccaccctgctcgcccgccagcatcatatgaatttc
gtcgagcgcttccggggcttcccgatcaacatcggccgcctctcgcgcctcgtccccgac
aaggaggcgaaggcggtgaaggcggggctggccgacggcagcgtcgacatcgtggtcggc
acccacgcgctgctcgccaaggggttggagttcaagcgcctcggcctcgtcatcgtggat
gaggaacagcggttcggcgtcacgcacaaggaacgattgaagaacctcaagaccgatgtg
catgtcctgacgctgaccgccacgccgatcccgcgcacgctgcaaatggcgatgtcgggc
ctgcgcgagttgtccgtcatccagacgccgccggtcgaccgcctggccgtgcgcacctat
gtcatgccgtgggacggcgtggtcatccgcgaggcgctgctgcgcgagcattatcgcggc
gggcagagcttcttcgtggtgccgcgcatttccgacctccccgatatcgaagagtttctc
cgcacagaagtcccagaagtccgtcccgtcgtcgcccacggccagatggcggcgggcgaa
gtggaagagcgcatgtcggccttctacgacaagcgttatgacgtgctgctctccaccacc
atcgtcgaaagcggcctcgacatccccagcgccaacacgctcgtcatccaccgggccgat
cgtttcggccttgcccagctttaccagctacgcgggcgcgtgggccgttcgaagacgcgc
gcctatgcatatttcacgacccccgccaaccgcgtcatcaccgaaacggcggaaaagcgg
ctgaaggtgctgtccgacctcgacacgctgggcgcggggttccagttggccagccacgat
ctcgacattcgcggcgcgggcaatctggtcggcgacgagcaatccggtcacatcaaggaa
gtcggcttcgaactctaccagtcgatgctggaggatgcgatcatggaagcgaaggcgggc
ggcgtcggcctcgaacgcccgcgcgacagcttctcgccccagatcaccgtcgatgcgccg
atcatgatccccgaagattacgtccccgacctcgacctgcgcatgggcctctaccgccgg
atcaacgaactggaggaccggcaggcgctggaatccttcgccgccgaactgatcgaccgc
ttcggcaagctgcccgcgccgacacagaacctgctcaagatcatagagatcaagcagaac
tgccttaccgccaacatcgccaagatcgacgtgggcgcgaaaggcgcgctggtcagcttc
cacgaggaccgcttccccaatccggcggggctcgtcagctatatccagcggctgaacggt
gtggcgcggctgcgcccggacagcaaggtcgtggtcaatcgcgcatgggccgatcccggc
gcgcggctgaacggcgcgctgcaactgtcgaaggggctggcgaaggcggcgggctga
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integrated database retrieval system
