Sphingobium cloacae: SCLO_1016930
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Entry
SCLO_1016930 CDS
T05301
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sclo
Sphingobium cloacae
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sclo03016
]
SCLO_1016930
Enzymes [BR:
sclo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SCLO_1016930
Transfer RNA biogenesis [BR:
sclo03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SCLO_1016930
BRITE hierarchy
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GFIT
Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
Motif
Other DBs
NCBI-ProteinID:
BAV64733
UniProt:
A0A1E1F2I3
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All DBs
Position
SCLO_1:complement(1940195..1940755)
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AA seq
186 aa
AA seq
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MMQTPASPCLRYRLFFALKPPHGVARRTDHLAAALAEGVPRIRTEHQHITLAITGDHAAY
PREAACRLLQAAETIMAAPFHLRLDRLSFSTRSAALRPSRAVQGLNALQRALVRAIEEAG
VMLRTGWRFSPHQTLFYRAGPVGHRPVEGFGWCVEDFALICSHVGRTRHEELGRWPLKGG
AQLSLF
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaacgcccgccagcccatgtctgcgataccgcctgttctttgcgctcaagccg
ccgcatggcgtggcgcgccggaccgatcatcttgcggcggcgctggctgaaggcgtccct
cgcatccggacggaacatcagcatatcacccttgccatcaccggcgatcacgcggcctat
ccccgagaggcggcatgccgattgctccaggccgccgagacgatcatggccgcccccttc
cacctccggctcgatcgcttgagcttttccacccgatccgcggcgcttcggccgtcccgc
gccgtgcaggggctgaacgcgctgcaacgcgcccttgtccgcgcgattgaggaggcgggc
gtgatgcttcgcaccggctggcgcttcagcccgcaccagacgcttttctaccgcgccggc
cctgtcgggcatcgacccgtggaaggctttggctggtgcgtcgaggatttcgcgttgatt
tgcagccatgtgggccgcacccggcatgaagagctgggccgatggccgctcaagggcggg
gcgcaactcagcctgttctga
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