Sphingobium cloacae: SCLO_1021760
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Entry
SCLO_1021760 CDS
T05301
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sclo
Sphingobium cloacae
Pathway
sclo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCLO_1021760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclo03021
]
SCLO_1021760
03019 Messenger RNA biogenesis [BR:
sclo03019
]
SCLO_1021760
Transcription machinery [BR:
sclo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SCLO_1021760
Messenger RNA biogenesis [BR:
sclo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SCLO_1021760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
Spore_III_AA
S1CSD-TOTE-2
AAA_22
NACHT
GpA_ATPase
AAA_25
AAA_14
AAA
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
BAV65216
UniProt:
A0A1E1F3W9
LinkDB
All DBs
Position
SCLO_1:2462280..2463536
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AA seq
418 aa
AA seq
DB search
MHLKDLKKQPPADLVTMAEELGVEGASTLRKQDLMFAILKAEAENGEQIMGEGTIEVLSD
GFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLLSVN
FDDPDVVRHRVNFDNLTPLYPEQKLSLDTLDPTVKDKSARVIDIVSPQGKGQRTLIVAPP
RVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVDKGKLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaaggacctcaagaaacagccacccgccgacctcgtcaccatggcggaggaa
ctgggcgtcgagggcgcgtcgaccctgcgcaagcaggatctgatgttcgcgatcctgaag
gccgaagcggaaaatggcgagcagatcatgggcgaaggcacgatcgaggtgctgtccgac
ggcttcggcttcctgcgctcacccgaagcgaatttcctcgccggtcccgacgacatctat
gtctcgcccaaccaggtccgcaaattcggcctgcgcaccggcgacacggtggaaggcgaa
atccgcgcacccaaggacggcgagcgctatttcgccttgaccaagctcctctcggtcaat
ttcgacgatcccgatgtcgtccgccaccgcgtcaatttcgataacctgacgccgctctat
cccgagcagaagctgtcgctcgacacgctggaccccaccgtcaaggacaagtcggcccgc
gtcatcgacatcgtgtcgccgcagggcaagggacagcgcaccctgatcgtcgcgccgccg
cgcgtcggcaagacggtgatgctccagaacatcgccaaggcgatcaccgacaaccatccc
gaagtcttcctgatcgtcctgctgatcgacgaacgcccggaagaagtcaccgacatgcag
cgcagcgtgaagggagaggtggtgtcgtccaccttcgacgaacccgcgcagcgccacgtc
caggtcgccgaaatggtgatcgaaaaggccaagcgcctggtcgagcacaagaaggatgtc
gtcatcctgctcgattccatcacgcgcctgggccgcgcctacaacaccgtggtgccttcg
tcgggcaaggtgctgaccggcggcgtcgacgcgaacgcgctccagcgtcccaagcgcttc
ttcggcgcggcgcgcaatatcgaggagggcggttcgctgtccatcatcgccaccgcgctg
atcgacaccggcagccgcatggacgaagtcatcttcgaagagttcaagggcaccggcaat
tccgagatcgtgctggaccgcaaggtggcggacaagcgcatcttcccggcgctggatgtc
ggcaagtccggcacccgcaaggaggaattgctggtcgacaagggcaagctcagcaagatg
tgggtgctgcgccgcatcctgatgcagatgggcacggtcgacgccatggaattcctgctg
gacaagatgaaggactccaagaccaatgaagatttcttcgattcgatgaaccaataa
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